diff options
author | Naeem Model <me@nmode.ca> | 2024-05-09 20:27:25 +0000 |
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committer | Naeem Model <me@nmode.ca> | 2024-05-09 20:27:25 +0000 |
commit | bd947aec1f45184154fc32a442953a3950e76c76 (patch) | |
tree | 4cff68efb9a52712a3a5aa1c767675684c30d403 /R | |
parent | dce01ac19a0298388089ce4297a44ef2aa2c4c46 (diff) |
Update docs
Diffstat (limited to 'R')
-rw-r--r-- | R/id.R | 2 | ||||
-rw-r--r-- | R/idea.R | 2 | ||||
-rw-r--r-- | R/seq_bayes.R | 2 | ||||
-rw-r--r-- | R/wp.R | 12 |
4 files changed, 8 insertions, 10 deletions
@@ -25,7 +25,7 @@ #' @return An estimate of the basic reproduction number (R0). #' #' @references [Fisman et al. (PloS One, 2013)]( -#' https://doi.org/10.1371/journal.pone.0083622) +#' https://doi.org/10.1371/journal.pone.0083622) #' #' @seealso [idea()] for a similar method. #' @@ -26,7 +26,7 @@ #' @return An estimate of the basic reproduction number (R0). #' #' @references [Fisman et al. (PloS One, 2013)]( -#' https://doi.org/10.1371/journal.pone.0083622) +#' https://doi.org/10.1371/journal.pone.0083622) #' #' @seealso [id()] for a similar method. #' diff --git a/R/seq_bayes.R b/R/seq_bayes.R index 4284419..d486d2b 100644 --- a/R/seq_bayes.R +++ b/R/seq_bayes.R @@ -52,7 +52,7 @@ #' posterior mean). #' #' @references [Bettencourt and Riberio (PloS One, 2008)]( -#' https://doi.org/10.1371/journal.pone.0002185) +#' https://doi.org/10.1371/journal.pone.0002185) #' #' @seealso `vignette("seq_bayes_post", package = "Rnaught")` for examples of #' using the posterior distribution. @@ -73,7 +73,7 @@ #' returned. #' #' @references [White and Pagano (Statistics in Medicine, 2008)]( -#' https://doi.org/10.1002/sim.3136) +#' https://doi.org/10.1002/sim.3136) #' #' @seealso `vignette("wp_serial", package="Rnaught")` for examples of using the #' serial distribution. @@ -152,9 +152,8 @@ wp <- function(cases, mu = NA, serial = FALSE, #' * `pmf` - the probability mass function of the estimated serial #' distribution #' -#' @references -#' [White and Pagano (Statistics in Medicine, 2008)]( -#' https://doi.org/10.1002/sim.3136) +#' @references [White and Pagano (Statistics in Medicine, 2008)]( +#' https://doi.org/10.1002/sim.3136) #' #' @seealso [wp()] for the function in which this grid search is called. #' @@ -207,9 +206,8 @@ wp_search <- function(cases, grid_length, max_shape, max_scale) { #' #' @return The sum inside the function `mu(t)` of the log likelihood. #' -#' @references -#' [White and Pagano (Statistics in Medicine, 2008)]( -#' https://doi.org/10.1002/sim.3136) +#' @references [White and Pagano (Statistics in Medicine, 2008)]( +#' https://doi.org/10.1002/sim.3136) #' #' @seealso [wp()] and [wp_search()] for the functions which require this sum. #' |