From bd947aec1f45184154fc32a442953a3950e76c76 Mon Sep 17 00:00:00 2001
From: Naeem Model <me@nmode.ca>
Date: Thu, 9 May 2024 20:27:25 +0000
Subject: Update docs

---
 R/id.R        |  2 +-
 R/idea.R      |  2 +-
 R/seq_bayes.R |  2 +-
 R/wp.R        | 12 +++++-------
 4 files changed, 8 insertions(+), 10 deletions(-)

(limited to 'R')

diff --git a/R/id.R b/R/id.R
index 91fa5ca..5277591 100644
--- a/R/id.R
+++ b/R/id.R
@@ -25,7 +25,7 @@
 #' @return An estimate of the basic reproduction number (R0).
 #'
 #' @references [Fisman et al. (PloS One, 2013)](
-#' https://doi.org/10.1371/journal.pone.0083622)
+#'   https://doi.org/10.1371/journal.pone.0083622)
 #'
 #' @seealso [idea()] for a similar method.
 #'
diff --git a/R/idea.R b/R/idea.R
index 53ba98a..14ba838 100644
--- a/R/idea.R
+++ b/R/idea.R
@@ -26,7 +26,7 @@
 #' @return An estimate of the basic reproduction number (R0).
 #'
 #' @references [Fisman et al. (PloS One, 2013)](
-#' https://doi.org/10.1371/journal.pone.0083622)
+#'   https://doi.org/10.1371/journal.pone.0083622)
 #'
 #' @seealso [id()] for a similar method.
 #'
diff --git a/R/seq_bayes.R b/R/seq_bayes.R
index 4284419..d486d2b 100644
--- a/R/seq_bayes.R
+++ b/R/seq_bayes.R
@@ -52,7 +52,7 @@
 #'   posterior mean).
 #'
 #' @references [Bettencourt and Riberio (PloS One, 2008)](
-#' https://doi.org/10.1371/journal.pone.0002185)
+#'   https://doi.org/10.1371/journal.pone.0002185)
 #'
 #' @seealso `vignette("seq_bayes_post", package = "Rnaught")` for examples of
 #'   using the posterior distribution.
diff --git a/R/wp.R b/R/wp.R
index 428f366..16b4bbb 100644
--- a/R/wp.R
+++ b/R/wp.R
@@ -73,7 +73,7 @@
 #'   returned.
 #'
 #' @references [White and Pagano (Statistics in Medicine, 2008)](
-#' https://doi.org/10.1002/sim.3136)
+#'   https://doi.org/10.1002/sim.3136)
 #'
 #' @seealso `vignette("wp_serial", package="Rnaught")` for examples of using the
 #'   serial distribution.
@@ -152,9 +152,8 @@ wp <- function(cases, mu = NA, serial = FALSE,
 #'   * `pmf` - the probability mass function of the estimated serial
 #'     distribution
 #'
-#' @references
-#' [White and Pagano (Statistics in Medicine, 2008)](
-#' https://doi.org/10.1002/sim.3136)
+#' @references [White and Pagano (Statistics in Medicine, 2008)](
+#'   https://doi.org/10.1002/sim.3136)
 #'
 #' @seealso [wp()] for the function in which this grid search is called.
 #'
@@ -207,9 +206,8 @@ wp_search <- function(cases, grid_length, max_shape, max_scale) {
 #'
 #' @return The sum inside the function `mu(t)` of the log likelihood.
 #'
-#' @references
-#' [White and Pagano (Statistics in Medicine, 2008)](
-#' https://doi.org/10.1002/sim.3136)
+#' @references [White and Pagano (Statistics in Medicine, 2008)](
+#'   https://doi.org/10.1002/sim.3136)
 #'
 #' @seealso [wp()] and [wp_search()] for the functions which require this sum.
 #'
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