diff options
Diffstat (limited to 'R')
| -rw-r--r-- | R/ui.R | 130 |
1 files changed, 130 insertions, 0 deletions
@@ -0,0 +1,130 @@ +ui <- function() { + shiny::fluidPage( + shinyjs::useShinyjs(), + + # Title. + shiny::titlePanel(shiny::HTML(paste0("Rnaught: an estimation suite for R", shiny::tags$sub("0")))), + + # Sidebar layout. + shiny::sidebarLayout( + # Sidebar. + shiny::sidebarPanel(id="sidebar", + # Data tab sidebar. + shiny::conditionalPanel(condition="input.tabset == 'Data'", + shiny::h4("Enter data"), + # Data input method selection. + shiny::radioButtons(inputId="dataInputMethod", label="", choices=list("Manually"=1, "Upload a .csv file"=2, "Paste a .csv file"=3)), + # Option 1: Manual entry. + shiny::conditionalPanel(condition="input.dataInputMethod == '1'", + shiny::textInput(inputId="dataName", label="Dataset name"), + shiny::span(shiny::textOutput(outputId="dataNameWarn"), style="color: red"), + shiny::fluidRow( + shiny::column(8, shiny::textInput(inputId="dataCounts", label=shiny::HTML(paste0("Case counts", shiny::tags$sup(id="dataCountsHelp", "[?]"))))), + shiny::column(4, shiny::selectInput(inputId="dataUnits", label="Reporting frequency", choices=list("Daily", "Weekly"))) + ), + shinyBS::bsTooltip(id="dataCountsHelp", "Enter as a comma-separated list of positive integers, with at least two entries. Ex: 1,1,2,3,5,8", placement="right", trigger="hover"), + shiny::span(shiny::textOutput(outputId="dataCountsWarn"), style="color: red") + ), + # Option 2: Upload .csv file. + shiny::conditionalPanel(condition="input.dataInputMethod == '2'", + shiny::fileInput(inputId="dataUpload", label="", accept=c("text/csv", "text/comma-separated-values,text/plain", ".csv")), + ), + # Option 3: Paste .csv file. + shiny::conditionalPanel(condition="input.dataInputMethod == '3'", + shiny::textAreaInput(inputId="dataPaste", label="", rows=8, resize="none"), + ), + # Warning text for .csv upload / paste. + shiny::conditionalPanel(condition="['2', '3'].includes(input.dataInputMethod)", + shiny::span(shiny::textOutput(outputId="dataCSVWarn"), style="color: red"), + ), + # Button to add data. + shiny::actionButton(inputId="addData", label="Add"), + ), + # Estimators tab sidebar + shiny::conditionalPanel(condition="input.tabset == 'Estimators'", + shiny::h4("Estimators"), + # Collapsible menu for estimation methods. + shinyBS::bsCollapse(id="estCollapse", + # WHITE & PANAGO (WP). + shinyBS::bsCollapsePanel(title="White & Panago (WP)", + "This is a description of the method.", + shiny::br(), shiny::br(), + shiny::radioButtons(inputId="serialWPKnown", label="Is the mean serial interval known?", inline=TRUE, choices=list("Yes"=1, "No"=2)), + # Known serial interval. + shiny::conditionalPanel(condition="input.serialWPKnown == '1'", + shiny::fluidRow( + shiny::column(8, shiny::textInput(inputId="serialWPInput", label="Mean Serial Interval")), + shiny::column(4, shiny::selectInput(inputId="serialWPUnits", label="Time units", choices=list("Days", "Weeks"))) + ), + shiny::span(shiny::textOutput(outputId="serialWPWarn"), style="color: red") + ), + # Unknown serial interval. + shiny::conditionalPanel(condition="input.serialWPKnown == '2'", + shiny::h5("Grid Search Parameters"), + shiny::fluidRow( + shiny::column(4, shiny::textInput(inputId="gridLengthInput", label="Grid length", value="100")), + shiny::column(4, shiny::textInput(inputId="gridShapeInput", label="Max. shape", value="10")), + shiny::column(4, shiny::textInput(inputId="gridScaleInput", label="Max. scale", value="10")) + ), + shiny::fluidRow( + shiny::column(4, shiny::span(shiny::textOutput(outputId="gridLengthWarn"), style="color: red")), + shiny::column(4, shiny::span(shiny::textOutput(outputId="gridShapeWarn"), style="color: red")), + shiny::column(4, shiny::span(shiny::textOutput(outputId="gridScaleWarn"), style="color: red")) + ) + ), + shiny::actionButton(inputId="addWP", label="Add") + ), + # SEQUENTIAL BAYES (seqB). + shinyBS::bsCollapsePanel(title="Sequential Bayes (seqB)", + "This is a description of the method.", + shiny::br(), shiny::br(), + shiny::fluidRow( + shiny::column(8, shiny::textInput(inputId="serialseqBInput", label="Mean Serial Interval")), + shiny::column(4, shiny::selectInput(inputId="serialseqBUnits", label="Time units", choices=list("Days", "Weeks"))) + ), + shiny::span(shiny::textOutput(outputId="serialseqBWarn"), style="color: red"), + shiny::textInput(inputId="kappaInput", label=shiny::HTML(paste0("Maximum value of the uniform prior", shiny::tags$sup(id="kappaTool", "[?]"))), value="20"), + shinyBS::bsTooltip(id="kappaTool", "Some information. By default, this is set to 20.", placement="right", trigger="hover"), + shiny::span(shiny::textOutput(outputId="kappaWarn"), style="color: red"), + shiny::actionButton(inputId="addseqB", label="Add") + ), + # INCIDENCE DECAY (ID). + shinyBS::bsCollapsePanel(title="Incidence Decay (ID)", + "This is a description of the method.", + shiny::br(), shiny::br(), + shiny::fluidRow( + shiny::column(8, shiny::textInput(inputId="serialIDInput", label="Mean Serial Interval")), + shiny::column(4, shiny::selectInput(inputId="serialIDUnits", label="Time units", choices=list("Days", "Weeks"))) + ), + shiny::span(shiny::textOutput(outputId="serialIDWarn"), style="color: red"), + shiny::actionButton(inputId="addID", label="Add") + ), + # INCIDENCE DECAY & EXPONENTIAL ADJUSTEMENT (IDEA). + shinyBS::bsCollapsePanel(title="Incidence Decay and Exponential Adjustement (IDEA)", + "This is a description of the method.", + shiny::br(), shiny::br(), + shiny::fluidRow( + shiny::column(8, shiny::textInput(inputId="serialIDEAInput", label="Mean Serial Interval")), + shiny::column(4, shiny::selectInput(inputId="serialIDEAUnits", label="Time units", choices=list("Days", "Weeks"))) + ), + shiny::span(shiny::textOutput(outputId="serialIDEAWarn"), style="color: red"), + shiny::actionButton(inputId="addIDEA", label="Add") + ) + ) + ) + ), + # Main panel. + shiny::mainPanel(id="main", + shiny::tabsetPanel(id="tabset", type="tabs", + shiny::tabPanel("About", shiny::br(), "Hello"), + shiny::tabPanel("Data", shiny::br(), shiny::dataTableOutput(outputId="dataTable"), shiny::tags$style(type="text/css", '#dataTable tfoot {display:none;}')), + shiny::tabPanel("Estimators", shiny::br(), + shiny::dataTableOutput(outputId="estTable"), + shiny::tags$style(type="text/css", "#estTable tfoot {display:none;}"), + shiny::downloadButton(outputId="downloadEst", label="Download table as .csv") + ), + ) + ) + ) + ) +} |