summaryrefslogtreecommitdiff
path: root/R/WP_internal.R
diff options
context:
space:
mode:
Diffstat (limited to 'R/WP_internal.R')
-rw-r--r--R/WP_internal.R8
1 files changed, 4 insertions, 4 deletions
diff --git a/R/WP_internal.R b/R/WP_internal.R
index 420d0c0..dd10d29 100644
--- a/R/WP_internal.R
+++ b/R/WP_internal.R
@@ -9,7 +9,7 @@
#'
#' @return The function returns the maximum likelihood estimator of R0.
#'
-#' @keywords internal
+#' @noRd
WP_known <- function(NT, p) {
k <- length(p)
TT <- length(NT) - 1
@@ -54,7 +54,7 @@ WP_known <- function(NT, p) {
#'
#' @importFrom stats pgamma qgamma
#'
-#' @keywords internal
+#' @noRd
WP_unknown <- function(NT, B = 100, shape.max = 10, scale.max = 10,
tol = 0.999) {
shape <- seq(0, shape.max, length.out = B + 1)
@@ -91,14 +91,14 @@ WP_unknown <- function(NT, B = 100, shape.max = 10, scale.max = 10,
#' This is a background/internal function called by \code{WP}. It computes the
#' log-likelihood.
#'
-#' @param NT Vector of case counts.
#' @param p Discretized version of the serial distribution.
+#' @param NT Vector of case counts.
#' @param R0 Basic reproductive ratio.
#'
#' @return This function returns the log-likelihood at the input variables and
#' parameters.
#'
-#' @keywords internal
+#' @noRd
computeLL <- function(p, NT, R0) {
k <- length(p)
TT <- length(NT) - 1