Add GitHub action to run 'R CMD check'

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
new file mode 100644 (file)
index 0000000..562fe0f
--- /dev/null
+++ b/.github/workflows/R-CMD-check.yaml
@@ -0,0 +1,51 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+
+name: R-CMD-check.yaml
+
+permissions: read-all
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

diff --git a/README.Rmd b/README.Rmd
index b9b38043d5940290825f04a095ca893bceb2379b..30fcdf5844384e7b545cb8aa5444b814e181f816 100644 (file)
--- a/README.Rmd
+++ b/README.Rmd
@@ -13,6 +13,10 @@ knitr::opts_chunk$set(
 
 # Rnaught <a href="https://MI2YorkU.github.io/Rnaught"><img src="man/figures/logo.svg" align="right" height="139" alt="Rnaught Logo"></a>
 
 
 # Rnaught <a href="https://MI2YorkU.github.io/Rnaught"><img src="man/figures/logo.svg" align="right" height="139" alt="Rnaught Logo"></a>
 

+<!-- badges: start -->
+[![R-CMD-check](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml)
+<!-- badges: end -->
+

 Rnaught is an R package and web application for estimating the
 [basic reproduction number (*R*<sub>0</sub>)](
 https://en.wikipedia.org/wiki/Basic_reproduction_number) of infectious diseases.
 Rnaught is an R package and web application for estimating the
 [basic reproduction number (*R*<sub>0</sub>)](
 https://en.wikipedia.org/wiki/Basic_reproduction_number) of infectious diseases.

diff --git a/README.md b/README.md
index f1dd1c8e39d569e2b861730ad7e8d79dbe926ad0..6525ed9594fe94d038452e160cf45f502e46a4d4 100644 (file)
--- a/README.md
+++ b/README.md
@@ -3,6 +3,11 @@
 
 # Rnaught <a href="https://MI2YorkU.github.io/Rnaught"><img src="man/figures/logo.svg" align="right" height="139" alt="Rnaught Logo"></a>
 
 
 # Rnaught <a href="https://MI2YorkU.github.io/Rnaught"><img src="man/figures/logo.svg" align="right" height="139" alt="Rnaught Logo"></a>
 

+<!-- badges: start -->
+
+[![R-CMD-check](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml)
+<!-- badges: end -->
+

 Rnaught is an R package and web application for estimating the [basic
 reproduction number
 (*R*<sub>0</sub>)](https://en.wikipedia.org/wiki/Basic_reproduction_number)
 Rnaught is an R package and web application for estimating the [basic
 reproduction number
 (*R*<sub>0</sub>)](https://en.wikipedia.org/wiki/Basic_reproduction_number)