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authorNaeem Model <me@nmode.ca>2024-02-13 08:22:47 +0000
committerNaeem Model <me@nmode.ca>2024-02-13 08:22:47 +0000
commite1c16cc937f241da2adc99c38ad7c9f09d204f9b (patch)
treeaa1d67d4a6d78614320555ba63d536866beb9bfe /man
parentcbe66a70a063988f5436e5e617a0ef6aeed0f166 (diff)
Update documentation
Diffstat (limited to 'man')
-rw-r--r--man/wp.Rd19
1 files changed, 12 insertions, 7 deletions
diff --git a/man/wp.Rd b/man/wp.Rd
index 450c948..7e4cc42 100644
--- a/man/wp.Rd
+++ b/man/wp.Rd
@@ -17,15 +17,16 @@ wp(
\item{cases}{Vector of case counts. The vector must be of length at least two
and only contain positive integers.}
-\item{mu}{Mean of the serial distribution. This must be a positive number or
-\code{NA}. If a number is specified, the value should match the case counts in
-time units. For example, if case counts are weekly and the serial
-distribution has a mean of seven days, then \code{mu} should be set to \code{1}. If
-case counts are daily and the serial distribution has a mean of seven days,
-then \code{mu} should be set to \code{7}.}
+\item{mu}{Mean of the serial distribution (defaults to \code{NA}). This must be a
+positive number or \code{NA}. If a number is specified, the value should match
+the case counts in time units. For example, if case counts are weekly and
+the serial distribution has a mean of seven days, then \code{mu} should be set
+to \code{1}. If case counts are daily and the serial distribution has a mean of
+seven days, then \code{mu} should be set to \code{7}.}
\item{serial}{Whether to return the estimated serial distribution in addition
-to the estimate of R0. This must be a value identical to \code{TRUE} or \code{FALSE}.}
+to the estimate of R0 (defaults to \code{FALSE}). This must be a value identical
+to \code{TRUE} or \code{FALSE}.}
\item{grid_length}{The length of the grid in the grid search (defaults to
100). This must be a positive integer. It will only be used if \code{mu} is set
@@ -126,3 +127,7 @@ estimate$pmf
\references{
\href{https://doi.org/10.1002/sim.3136}{White and Pagano (Statistics in Medicine, 2008)}
}
+\seealso{
+\code{vignette("wp_serial", package="Rnaught")} for examples of using the
+serial distribution.
+}