diff options
| author | Naeem Model <me@nmode.ca> | 2024-06-09 16:01:51 +0000 |
|---|---|---|
| committer | Naeem Model <me@nmode.ca> | 2024-06-09 16:01:51 +0000 |
| commit | 9fd931aeeba4ab7bdede1a625f64e7024c2b55aa (patch) | |
| tree | b59967df497f898e9b8f7e1cd0e345ed0ff71e36 /inst/app/templates/content/estimators/add-estimators/descriptions | |
| parent | 887c57c423ca8318d482a9f85514b3d6f281a696 (diff) | |
Update Shiny app
- Remove template/logic for single data entry
- Change 'Add estimators' to 'About estimators'; adding estimators and viewing estimates are now done in the same tab
- Swap rows and columns in estimates table (estimators as row names, datasets as column names)
- Add a separate column for the serial interval to the estimates table
- Add plots for daily and weekly data using the Plotly library
- Remove italics from the subscript in all occurences of 'R_0'
- Fix code/text formatting
Diffstat (limited to 'inst/app/templates/content/estimators/add-estimators/descriptions')
5 files changed, 0 insertions, 11 deletions
diff --git a/inst/app/templates/content/estimators/add-estimators/descriptions/id.html b/inst/app/templates/content/estimators/add-estimators/descriptions/id.html deleted file mode 100644 index b47850f..0000000 --- a/inst/app/templates/content/estimators/add-estimators/descriptions/id.html +++ /dev/null @@ -1 +0,0 @@ -The incidence decay (ID) estimator assumes an exponential model and finds the parameters by minimizing the sum of the squared differences between the observed cases counts and the case counts expected based on the assumed model. The method assumes that the serial interval is known. This means that the user needs to input the value of the serial interval. The serial interval is the average time between the first infection and the time the first infected individual exhibits disease symptoms. diff --git a/inst/app/templates/content/estimators/add-estimators/descriptions/idea.html b/inst/app/templates/content/estimators/add-estimators/descriptions/idea.html deleted file mode 100644 index edfbb79..0000000 --- a/inst/app/templates/content/estimators/add-estimators/descriptions/idea.html +++ /dev/null @@ -1 +0,0 @@ -This is a short description of the IDEA method. diff --git a/inst/app/templates/content/estimators/add-estimators/descriptions/mu.html b/inst/app/templates/content/estimators/add-estimators/descriptions/mu.html deleted file mode 100644 index 6e7bfe9..0000000 --- a/inst/app/templates/content/estimators/add-estimators/descriptions/mu.html +++ /dev/null @@ -1,7 +0,0 @@ -The serial interval (SI) is NOT one of the estimators. - -<p>The SI is a parameter required by all of the estimators, and can also be estimated by the WP method.</p> - -<p>The SI is defined as the average time between successive infections in a chain of transmission i.e., the time between the infection of an infected and their subsequent transmissions. </p> - -<P> Make the tab a different shade (light gray) and then this won't have parameters. It will let us not have to explain SI every single time. We'll expand the description later.</p> diff --git a/inst/app/templates/content/estimators/add-estimators/descriptions/seq_bayes.html b/inst/app/templates/content/estimators/add-estimators/descriptions/seq_bayes.html deleted file mode 100644 index f6df3ee..0000000 --- a/inst/app/templates/content/estimators/add-estimators/descriptions/seq_bayes.html +++ /dev/null @@ -1 +0,0 @@ -This is a short description of the seqB method. diff --git a/inst/app/templates/content/estimators/add-estimators/descriptions/wp.html b/inst/app/templates/content/estimators/add-estimators/descriptions/wp.html deleted file mode 100644 index 640b44d..0000000 --- a/inst/app/templates/content/estimators/add-estimators/descriptions/wp.html +++ /dev/null @@ -1 +0,0 @@ -This is a short description of the WP method. |