Update Shiny app

- Remove template/logic for single data entry
- Change 'Add estimators' to 'About estimators'; adding estimators and viewing estimates are now done in the same tab
- Swap rows and columns in estimates table (estimators as row names, datasets as column names)
- Add a separate column for the serial interval to the estimates table
- Add plots for daily and weekly data using the Plotly library
- Remove italics from the subscript in all occurences of 'R_0'
- Fix code/text formatting

2 files changed, 0 insertions, 41 deletions

diff --git a/inst/app/templates/content/estimators/add-estimators/components/mu.html b/inst/app/templates/content/estimators/add-estimators/components/mu.html
deleted file mode 100644
index f25a1c8..0000000
--- a/inst/app/templates/content/estimators/add-estimators/components/mu.html
+++ /dev/null
@@ -1,20 +0,0 @@
-<!-- Serial interval label and help tooltip. -->
-<label class="form-label" for="mu_{{ id }}">
-  Serial interval (&#956;)
-  <sup data-bs-toggle="tooltip" data-bs-placement="right"
-       data-bs-title="The serial interval is the time between when an infected individual (the infector) becomes
-                      symptomatic, to when another individual (who is infected by the infector) becomes symptomatic.">
-    [?]
-  </sup>
-</label>
-<div class="input-group">
-  <!-- Serial interval input field. -->
-  <input name="mu_{{ id }}" class="form-control" type="text">
-  <!-- Days/weeks dropdown. -->
-  <select name="mu_{{ id }}_units" class="form-select">
-    <option value="Days" selected>Days</option>
-    <option value="Weeks">Weeks</option>
-  </select>
-</div>
-<!-- Warning text for incorrect values. -->
-<small id="mu_{{ id }}_warn" class="form-text text-primary shiny-text-output"></small>
diff --git a/inst/app/templates/content/estimators/add-estimators/components/panel.html b/inst/app/templates/content/estimators/add-estimators/components/panel.html
deleted file mode 100644
index b1e0378..0000000
--- a/inst/app/templates/content/estimators/add-estimators/components/panel.html
+++ /dev/null
@@ -1,21 +0,0 @@
-<div class="accordion-item">
-  <h2 class="accordion-header">
-    <button class="accordion-button collapsed" type="button"
-            data-bs-toggle="collapse" data-bs-target="#{{ id }}">
-      <h4>{{ header }}</h4>
-    </button>
-  </h2>
-  <div id="{{ id }}" class="accordion-collapse collapse" data-bs-parent="#estimators-accordion">
-    <div class="accordion-body">
-      <p>Reference: <a href="{{ reference_url }}" target="_blank"><em>{{ reference_label }}</em></a></p>
-      <p>{{ htmlTemplate(paste0("templates/content/estimators/add-estimators/descriptions/", id, ".html")) }}</p>
-      <h5>Parameters</h5>
-      <form class="my-3">
-        {{ htmlTemplate(paste0("templates/content/estimators/add-estimators/parameters/", id, ".html")) }}
-      </form>
-      <button id="add_{{ id }}" type="button" class="btn btn-outline-primary btn-sm action-button">
-        <span class="glyphicon glyphicon-plus"></span> Add
-      </button>
-    </div>
-  </div>
-</div>