Update Shiny app

- Remove template/logic for single data entry
- Change 'Add estimators' to 'About estimators'; adding estimators and viewing estimates are now done in the same tab
- Swap rows and columns in estimates table (estimators as row names, datasets as column names)
- Add a separate column for the serial interval to the estimates table
- Add plots for daily and weekly data using the Plotly library
- Remove italics from the subscript in all occurences of 'R_0'
- Fix code/text formatting

1 files changed, 39 insertions, 0 deletions

diff --git a/inst/app/templates/content/estimation/estimates/add-estimators/wp.html b/inst/app/templates/content/estimation/estimates/add-estimators/wp.html
new file mode 100644
index 0000000..511170f
--- /dev/null
+++ b/inst/app/templates/content/estimation/estimates/add-estimators/wp.html
@@ -0,0 +1,39 @@
+<!-- Radio buttons to specify whether the serial interval is known. -->
+<label class="form-label" for="wp_mu_known">Is the serial interval known?</label>
+<div class="shiny-input-radiogroup" id="wp_mu_known">
+  <div class="form-check form-check-inline">
+    <label class="form-check-label">
+      <input type="radio" class="form-check-input me-2" name="wp_mu_known" value="Yes" checked>Yes
+    </label>
+  </div>
+  <div class="form-check form-check-inline">
+    <label class="form-check-label">
+      <input type="radio" class="form-check-input me-2" name="wp_mu_known" value="No">No
+    </label>
+  </div>
+</div>
+<!-- Show the input field for the serial interval if it is known. -->
+<div data-display-if="input.wp_mu_known == 'Yes'" class="mt-2 mt-md-0">
+  {{ htmlTemplate("templates/content/estimation/estimates/add-estimators/mu.html", id = "wp") }}
+</div>
+<!-- Show the input fields for the grid search parameters if the serial interval is unknown. -->
+<div data-display-if="input.wp_mu_known == 'No'" class="row">
+  <!-- Grid length. -->
+  <div class="col-md mt-2 mt-md-0">
+    <label class="form-label" for="grid_length">Grid length</label>
+    <input name="grid_length" class="form-control" type="text" placeholder="Default: 100">
+    <small id="grid_length_warn" class="form-text text-primary shiny-text-output"></small>
+  </div>
+  <!-- Maximum shape. -->
+  <div class="col-md mt-2 mt-md-0">
+    <label class="form-label" for="max_shape">Maximum shape</label>
+    <input name="max_shape" class="form-control" type="text" placeholder="Default: 10">
+    <small id="max_shape_warn" class="form-text text-primary shiny-text-output"></small>
+  </div>
+  <!-- Grid length. -->
+  <div class="col-md mt-2 mt-md-0">
+    <label class="form-label" for="max_scale">Maximum scale</label>
+    <input name="max_scale" class="form-control" type="text" placeholder="Default: 10">
+    <small id="max_scale_warn" class="form-text text-primary shiny-text-output"></small>
+  </div>
+</div>