Update Shiny app

- Remove template/logic for single data entry
- Change 'Add estimators' to 'About estimators'; adding estimators and viewing estimates are now done in the same tab
- Swap rows and columns in estimates table (estimators as row names, datasets as column names)
- Add a separate column for the serial interval to the estimates table
- Add plots for daily and weekly data using the Plotly library
- Remove italics from the subscript in all occurences of 'R_0'
- Fix code/text formatting

1 files changed, 0 insertions, 48 deletions

diff --git a/inst/app/templates/content/data/enter-data/bulk-entry.html b/inst/app/templates/content/data/enter-data/bulk-entry.html
deleted file mode 100644
index 30fab06..0000000
--- a/inst/app/templates/content/data/enter-data/bulk-entry.html
+++ /dev/null
@@ -1,48 +0,0 @@
-<h4 class="mb-3">Bulk entry</h4>
-<!-- Button to toggle help text. -->
-<button type="button" class="btn btn-outline-primary btn-sm" id="bulk-help-toggle"
-        data-bs-toggle="collapse" data-bs-target="#bulk-help">Show required format</button>
-<!-- Help text for bulk input format. -->
-<div class="collapse mt-2" id="bulk-help">
-  <div class="card card-body border-primary">
-    <p>Manually enter rows or upload a CSV file in the following format:</p>
-    <p class="overflow-x-scroll text-nowrap font-monospace">
-      <u>Dataset name</u>,<u>Time units</u>,<u>Case counts</u>
-    </p>
-    <p>
-      <u class="font-monospace">Time units</u> must be one of
-      <u class="font-monospace">Days</u> or 
-      <u class="font-monospace">Weeks</u>, and
-      <u class="font-monospace">Case counts</u>
-      must be a comma-separated list of one or more non-negative integers.
-    </p>
-    <p>Example:</p>
-    <p class="overflow-x-scroll text-nowrap font-monospace lh-sm">
-      Montreal,Days,1,2,3,4,5,6,7,8,9,19<br>
-      Ottawa,Weeks,1,2,3,4,5,6,7,8,9,19<br>
-      Toronto,Days,1,2,3,4,5,6,7,8,9,19
-    </p>
-  </div>
-</div>
-<!-- Data input area. -->
-<div class="my-4">
-  <label class="form-label" for="data_area">Enter manually</label>
-  <textarea id="data_area" class="form-control" rows="3" wrap="off"></textarea>
-  <div>
-    <small id="data_area_warn" class="form-text text-primary shiny-html-output"></small>
-  </div>
-  <button id="data_bulk" type="button" class="btn btn-outline-primary btn-sm action-button mt-3">
-    <span class="glyphicon glyphicon-plus"></span> Add
-  </button>
-</div>
-<!-- File input for data upload (hidden). -->
-<input class="form-control" type="file" id="data_upload" accept="text/csv,text/comma-separated-values,text/plain,.csv">
-<!-- Custom button to trigger file selector for data upload (visible). -->
-<label class="form-label" for="data-upload-select">Upload a CSV file</label>
-<div class="input-group">
-  <button id="data-upload-select" type="button" class="btn btn-outline-primary btn-sm">
-    <span class="glyphicon glyphicon-file"></span> Select file
-  </button>
-  <input type="text" id="data-upload-name" class="form-control" placeholder="No file selected" disabled>
-</div>
-<small id="data_upload_warn" class="form-text text-primary shiny-html-output"></small>