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authorNaeem Model <me@nmode.ca>2023-06-24 23:37:01 +0000
committerNaeem Model <me@nmode.ca>2023-06-24 23:37:01 +0000
commita50ca5855eecf12908327252d627df3af076fc88 (patch)
treef806607b46c0ee56cbfd1d633279251d18d2aab5
parent4a0971cc60ed64729a23353b2f03177a723e331a (diff)
Create shiny UI
-rw-r--r--R/ui.R130
1 files changed, 130 insertions, 0 deletions
diff --git a/R/ui.R b/R/ui.R
new file mode 100644
index 0000000..8233ba5
--- /dev/null
+++ b/R/ui.R
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+ui <- function() {
+ shiny::fluidPage(
+ shinyjs::useShinyjs(),
+
+ # Title.
+ shiny::titlePanel(shiny::HTML(paste0("Rnaught: an estimation suite for R", shiny::tags$sub("0")))),
+
+ # Sidebar layout.
+ shiny::sidebarLayout(
+ # Sidebar.
+ shiny::sidebarPanel(id="sidebar",
+ # Data tab sidebar.
+ shiny::conditionalPanel(condition="input.tabset == 'Data'",
+ shiny::h4("Enter data"),
+ # Data input method selection.
+ shiny::radioButtons(inputId="dataInputMethod", label="", choices=list("Manually"=1, "Upload a .csv file"=2, "Paste a .csv file"=3)),
+ # Option 1: Manual entry.
+ shiny::conditionalPanel(condition="input.dataInputMethod == '1'",
+ shiny::textInput(inputId="dataName", label="Dataset name"),
+ shiny::span(shiny::textOutput(outputId="dataNameWarn"), style="color: red"),
+ shiny::fluidRow(
+ shiny::column(8, shiny::textInput(inputId="dataCounts", label=shiny::HTML(paste0("Case counts", shiny::tags$sup(id="dataCountsHelp", "[?]"))))),
+ shiny::column(4, shiny::selectInput(inputId="dataUnits", label="Reporting frequency", choices=list("Daily", "Weekly")))
+ ),
+ shinyBS::bsTooltip(id="dataCountsHelp", "Enter as a comma-separated list of positive integers, with at least two entries. Ex: 1,1,2,3,5,8", placement="right", trigger="hover"),
+ shiny::span(shiny::textOutput(outputId="dataCountsWarn"), style="color: red")
+ ),
+ # Option 2: Upload .csv file.
+ shiny::conditionalPanel(condition="input.dataInputMethod == '2'",
+ shiny::fileInput(inputId="dataUpload", label="", accept=c("text/csv", "text/comma-separated-values,text/plain", ".csv")),
+ ),
+ # Option 3: Paste .csv file.
+ shiny::conditionalPanel(condition="input.dataInputMethod == '3'",
+ shiny::textAreaInput(inputId="dataPaste", label="", rows=8, resize="none"),
+ ),
+ # Warning text for .csv upload / paste.
+ shiny::conditionalPanel(condition="['2', '3'].includes(input.dataInputMethod)",
+ shiny::span(shiny::textOutput(outputId="dataCSVWarn"), style="color: red"),
+ ),
+ # Button to add data.
+ shiny::actionButton(inputId="addData", label="Add"),
+ ),
+ # Estimators tab sidebar
+ shiny::conditionalPanel(condition="input.tabset == 'Estimators'",
+ shiny::h4("Estimators"),
+ # Collapsible menu for estimation methods.
+ shinyBS::bsCollapse(id="estCollapse",
+ # WHITE & PANAGO (WP).
+ shinyBS::bsCollapsePanel(title="White & Panago (WP)",
+ "This is a description of the method.",
+ shiny::br(), shiny::br(),
+ shiny::radioButtons(inputId="serialWPKnown", label="Is the mean serial interval known?", inline=TRUE, choices=list("Yes"=1, "No"=2)),
+ # Known serial interval.
+ shiny::conditionalPanel(condition="input.serialWPKnown == '1'",
+ shiny::fluidRow(
+ shiny::column(8, shiny::textInput(inputId="serialWPInput", label="Mean Serial Interval")),
+ shiny::column(4, shiny::selectInput(inputId="serialWPUnits", label="Time units", choices=list("Days", "Weeks")))
+ ),
+ shiny::span(shiny::textOutput(outputId="serialWPWarn"), style="color: red")
+ ),
+ # Unknown serial interval.
+ shiny::conditionalPanel(condition="input.serialWPKnown == '2'",
+ shiny::h5("Grid Search Parameters"),
+ shiny::fluidRow(
+ shiny::column(4, shiny::textInput(inputId="gridLengthInput", label="Grid length", value="100")),
+ shiny::column(4, shiny::textInput(inputId="gridShapeInput", label="Max. shape", value="10")),
+ shiny::column(4, shiny::textInput(inputId="gridScaleInput", label="Max. scale", value="10"))
+ ),
+ shiny::fluidRow(
+ shiny::column(4, shiny::span(shiny::textOutput(outputId="gridLengthWarn"), style="color: red")),
+ shiny::column(4, shiny::span(shiny::textOutput(outputId="gridShapeWarn"), style="color: red")),
+ shiny::column(4, shiny::span(shiny::textOutput(outputId="gridScaleWarn"), style="color: red"))
+ )
+ ),
+ shiny::actionButton(inputId="addWP", label="Add")
+ ),
+ # SEQUENTIAL BAYES (seqB).
+ shinyBS::bsCollapsePanel(title="Sequential Bayes (seqB)",
+ "This is a description of the method.",
+ shiny::br(), shiny::br(),
+ shiny::fluidRow(
+ shiny::column(8, shiny::textInput(inputId="serialseqBInput", label="Mean Serial Interval")),
+ shiny::column(4, shiny::selectInput(inputId="serialseqBUnits", label="Time units", choices=list("Days", "Weeks")))
+ ),
+ shiny::span(shiny::textOutput(outputId="serialseqBWarn"), style="color: red"),
+ shiny::textInput(inputId="kappaInput", label=shiny::HTML(paste0("Maximum value of the uniform prior", shiny::tags$sup(id="kappaTool", "[?]"))), value="20"),
+ shinyBS::bsTooltip(id="kappaTool", "Some information. By default, this is set to 20.", placement="right", trigger="hover"),
+ shiny::span(shiny::textOutput(outputId="kappaWarn"), style="color: red"),
+ shiny::actionButton(inputId="addseqB", label="Add")
+ ),
+ # INCIDENCE DECAY (ID).
+ shinyBS::bsCollapsePanel(title="Incidence Decay (ID)",
+ "This is a description of the method.",
+ shiny::br(), shiny::br(),
+ shiny::fluidRow(
+ shiny::column(8, shiny::textInput(inputId="serialIDInput", label="Mean Serial Interval")),
+ shiny::column(4, shiny::selectInput(inputId="serialIDUnits", label="Time units", choices=list("Days", "Weeks")))
+ ),
+ shiny::span(shiny::textOutput(outputId="serialIDWarn"), style="color: red"),
+ shiny::actionButton(inputId="addID", label="Add")
+ ),
+ # INCIDENCE DECAY & EXPONENTIAL ADJUSTEMENT (IDEA).
+ shinyBS::bsCollapsePanel(title="Incidence Decay and Exponential Adjustement (IDEA)",
+ "This is a description of the method.",
+ shiny::br(), shiny::br(),
+ shiny::fluidRow(
+ shiny::column(8, shiny::textInput(inputId="serialIDEAInput", label="Mean Serial Interval")),
+ shiny::column(4, shiny::selectInput(inputId="serialIDEAUnits", label="Time units", choices=list("Days", "Weeks")))
+ ),
+ shiny::span(shiny::textOutput(outputId="serialIDEAWarn"), style="color: red"),
+ shiny::actionButton(inputId="addIDEA", label="Add")
+ )
+ )
+ )
+ ),
+ # Main panel.
+ shiny::mainPanel(id="main",
+ shiny::tabsetPanel(id="tabset", type="tabs",
+ shiny::tabPanel("About", shiny::br(), "Hello"),
+ shiny::tabPanel("Data", shiny::br(), shiny::dataTableOutput(outputId="dataTable"), shiny::tags$style(type="text/css", '#dataTable tfoot {display:none;}')),
+ shiny::tabPanel("Estimators", shiny::br(),
+ shiny::dataTableOutput(outputId="estTable"),
+ shiny::tags$style(type="text/css", "#estTable tfoot {display:none;}"),
+ shiny::downloadButton(outputId="downloadEst", label="Download table as .csv")
+ ),
+ )
+ )
+ )
+ )
+}