ui <- function() {
shiny::fluidPage(
- shinyjs::useShinyjs(),
-
# Title.
- shiny::titlePanel(shiny::HTML(paste0("Rnaught: an estimation suite for R", shiny::tags$sub("0")))),
+ shiny::titlePanel(shiny::HTML(paste0("Rnaught: An Estimation Suite for R", shiny::tags$sub("0")))),
# Sidebar layout.
shiny::sidebarLayout(
- # Sidebar.
- shiny::sidebarPanel(id="sidebar",
- # Data tab sidebar.
- shiny::conditionalPanel(condition="input.tabset == 'Data'",
- shiny::h4("Enter data"),
- # Data input method selection.
- shiny::radioButtons(inputId="dataInputMethod", label="", choices=list("Manually"=1, "Upload a .csv file"=2, "Paste a .csv file"=3)),
- # Option 1: Manual entry.
- shiny::conditionalPanel(condition="input.dataInputMethod == '1'",
- shiny::textInput(inputId="dataName", label="Dataset name"),
- shiny::span(shiny::textOutput(outputId="dataNameWarn"), style="color: red"),
- shiny::fluidRow(
- shiny::column(8, shiny::textInput(inputId="dataCounts", label=shiny::HTML(paste0("Case counts", shiny::tags$sup(id="dataCountsHelp", "[?]"))))),
- shiny::column(4, shiny::selectInput(inputId="dataUnits", label="Reporting frequency", choices=list("Daily", "Weekly")))
+ # Sidebar. Hidden if the 'About' tab is selected.
+ shiny::conditionalPanel(condition="input.tabset != 'About'",
+ shiny::sidebarPanel(id="sidebar",
+ # Data tab sidebar.
+ shiny::conditionalPanel(condition="input.tabset == 'Data'",
+ shiny::h3("Enter data"),
+ # Data input method selection.
+ shiny::radioButtons(inputId="dataInputMethod", label="", choices=list("Manually"=1, "Upload a .csv file"=2, "Paste a .csv file"=3)),
+ # Option 1: Manual entry.
+ shiny::conditionalPanel(condition="input.dataInputMethod == '1'",
+ shiny::textInput(inputId="dataName", label="Dataset name"),
+ shiny::span(shiny::textOutput(outputId="dataNameWarn"), style="color: red;"),
+ shiny::fluidRow(
+ shiny::column(8, shiny::textInput(inputId="dataCounts", label=shiny::HTML(paste0(
+ "Case counts", shiny::tags$sup("[?]", title="Enter as a comma-separated list of positive integers, with at least two entries. Ex: 1,1,2,3,5,8"))))
+ ),
+ shiny::column(4, shiny::selectInput(inputId="dataUnits", label="Reporting frequency", choices=list("Daily", "Weekly")))
+ ),
+ shiny::span(shiny::textOutput(outputId="dataCountsWarn"), style="color: red;")
),
- shinyBS::bsTooltip(id="dataCountsHelp", "Enter as a comma-separated list of positive integers, with at least two entries. Ex: 1,1,2,3,5,8", placement="right", trigger="hover"),
- shiny::span(shiny::textOutput(outputId="dataCountsWarn"), style="color: red")
- ),
- # Option 2: Upload .csv file.
- shiny::conditionalPanel(condition="input.dataInputMethod == '2'",
- shiny::fileInput(inputId="dataUpload", label="", accept=c("text/csv", "text/comma-separated-values,text/plain", ".csv")),
- ),
- # Option 3: Paste .csv file.
- shiny::conditionalPanel(condition="input.dataInputMethod == '3'",
- shiny::textAreaInput(inputId="dataPaste", label="", rows=8, resize="none"),
- ),
- # Warning text for .csv upload / paste.
- shiny::conditionalPanel(condition="['2', '3'].includes(input.dataInputMethod)",
- shiny::span(shiny::textOutput(outputId="dataCSVWarn"), style="color: red"),
+ # Option 2: Upload .csv file.
+ shiny::conditionalPanel(condition="input.dataInputMethod == '2'",
+ shiny::fileInput(inputId="dataUpload", label="", accept=c("text/csv", "text/comma-separated-values,text/plain", ".csv")),
+ ),
+ # Option 3: Paste .csv file.
+ shiny::conditionalPanel(condition="input.dataInputMethod == '3'",
+ shiny::textAreaInput(inputId="dataPaste", label="", rows=8, resize="none"),
+ ),
+ # Warning text for .csv upload / paste.
+ shiny::conditionalPanel(condition="['2', '3'].includes(input.dataInputMethod)",
+ shiny::span(shiny::textOutput(outputId="dataCSVWarn"), style="color: red;"),
+ ),
+ # Button to add data.
+ shiny::actionButton(inputId="addData", label="Add"),
),
- # Button to add data.
- shiny::actionButton(inputId="addData", label="Add"),
- ),
- # Estimators tab sidebar
- shiny::conditionalPanel(condition="input.tabset == 'Estimators'",
- shiny::h4("Estimators"),
- # Collapsible menu for estimation methods.
- shinyBS::bsCollapse(id="estCollapse",
+ # Estimators tab sidebar (collapsable entries).
+ shiny::conditionalPanel(condition="input.tabset == 'Estimators'",
+ shiny::h3("Estimators"),
# WHITE & PANAGO (WP).
- shinyBS::bsCollapsePanel(title="White & Panago (WP)",
- "This is a description of the method.",
- shiny::br(), shiny::br(),
+ shiny::tags$details(
+ shiny::tags$summary(shiny::h4("White & Panago (WP)")),
+ shiny::p("This is a description of the method."),
+ shiny::br(),
shiny::radioButtons(inputId="serialWPKnown", label="Is the mean serial interval known?", inline=TRUE, choices=list("Yes"=1, "No"=2)),
# Known serial interval.
shiny::conditionalPanel(condition="input.serialWPKnown == '1'",
shiny::column(8, shiny::textInput(inputId="serialWPInput", label="Mean Serial Interval")),
shiny::column(4, shiny::selectInput(inputId="serialWPUnits", label="Time units", choices=list("Days", "Weeks")))
),
- shiny::span(shiny::textOutput(outputId="serialWPWarn"), style="color: red")
+ shiny::span(shiny::textOutput(outputId="serialWPWarn"), style="color: red;")
),
# Unknown serial interval.
shiny::conditionalPanel(condition="input.serialWPKnown == '2'",
shiny::column(4, shiny::textInput(inputId="gridScaleInput", label="Max. scale", value="10"))
),
shiny::fluidRow(
- shiny::column(4, shiny::span(shiny::textOutput(outputId="gridLengthWarn"), style="color: red")),
- shiny::column(4, shiny::span(shiny::textOutput(outputId="gridShapeWarn"), style="color: red")),
- shiny::column(4, shiny::span(shiny::textOutput(outputId="gridScaleWarn"), style="color: red"))
+ shiny::column(4, shiny::span(shiny::textOutput(outputId="gridLengthWarn"), style="color: red;")),
+ shiny::column(4, shiny::span(shiny::textOutput(outputId="gridShapeWarn"), style="color: red;")),
+ shiny::column(4, shiny::span(shiny::textOutput(outputId="gridScaleWarn"), style="color: red;"))
)
),
shiny::actionButton(inputId="addWP", label="Add")
),
# SEQUENTIAL BAYES (seqB).
- shinyBS::bsCollapsePanel(title="Sequential Bayes (seqB)",
- "This is a description of the method.",
- shiny::br(), shiny::br(),
+ shiny::tags$details(
+ shiny::tags$summary(shiny::h4("Sequential Bayes (seqB)")),
+ shiny::p("This is a description of the method."),
+ shiny::br(),
shiny::fluidRow(
shiny::column(8, shiny::textInput(inputId="serialseqBInput", label="Mean Serial Interval")),
shiny::column(4, shiny::selectInput(inputId="serialseqBUnits", label="Time units", choices=list("Days", "Weeks")))
),
- shiny::span(shiny::textOutput(outputId="serialseqBWarn"), style="color: red"),
- shiny::textInput(inputId="kappaInput", label=shiny::HTML(paste0("Maximum value of the uniform prior", shiny::tags$sup(id="kappaTool", "[?]"))), value="20"),
- shinyBS::bsTooltip(id="kappaTool", "Some information. By default, this is set to 20.", placement="right", trigger="hover"),
- shiny::span(shiny::textOutput(outputId="kappaWarn"), style="color: red"),
+ shiny::span(shiny::textOutput(outputId="serialseqBWarn"), style="color: red;"),
+ shiny::textInput(inputId="kappaInput", label=shiny::HTML(paste0("Maximum value of the uniform prior",
+ shiny::tags$sup("[?]", title="This describes the prior belief of R0, and should be set to a higher value if R0 is believed to be larger. (Default: 20)"))),
+ value="20"
+ ),
+ shiny::span(shiny::textOutput(outputId="kappaWarn"), style="color: red;"),
shiny::actionButton(inputId="addseqB", label="Add")
),
# INCIDENCE DECAY (ID).
- shinyBS::bsCollapsePanel(title="Incidence Decay (ID)",
- "This is a description of the method.",
- shiny::br(), shiny::br(),
+ shiny::tags$details(
+ shiny::tags$summary(shiny::h4("Incidence Decay (ID)")),
+ shiny::p("This is a description of the method."),
+ shiny::br(),
shiny::fluidRow(
shiny::column(8, shiny::textInput(inputId="serialIDInput", label="Mean Serial Interval")),
shiny::column(4, shiny::selectInput(inputId="serialIDUnits", label="Time units", choices=list("Days", "Weeks")))
),
- shiny::span(shiny::textOutput(outputId="serialIDWarn"), style="color: red"),
+ shiny::span(shiny::textOutput(outputId="serialIDWarn"), style="color: red;"),
shiny::actionButton(inputId="addID", label="Add")
),
# INCIDENCE DECAY & EXPONENTIAL ADJUSTEMENT (IDEA).
- shinyBS::bsCollapsePanel(title="Incidence Decay and Exponential Adjustement (IDEA)",
- "This is a description of the method.",
- shiny::br(), shiny::br(),
+ shiny::tags$details(
+ shiny::tags$summary(shiny::h4("Incidence Decay and Exponential Adjustement (IDEA)")),
+ shiny::p("This is a description of the method."),
+ shiny::br(),
shiny::fluidRow(
shiny::column(8, shiny::textInput(inputId="serialIDEAInput", label="Mean Serial Interval")),
shiny::column(4, shiny::selectInput(inputId="serialIDEAUnits", label="Time units", choices=list("Days", "Weeks")))
),
- shiny::span(shiny::textOutput(outputId="serialIDEAWarn"), style="color: red"),
+ shiny::span(shiny::textOutput(outputId="serialIDEAWarn"), style="color: red;"),
shiny::actionButton(inputId="addIDEA", label="Add")
- )
+ ),
+ shiny::tags$style(type="text/css", "summary { display: list-item; cursor: pointer; }"),
+ shiny::tags$style(type="text/css", "summary h4 { display: inline; }")
)
)
),
shiny::mainPanel(id="main",
shiny::tabsetPanel(id="tabset", type="tabs",
shiny::tabPanel("About", shiny::br(), "Hello"),
- shiny::tabPanel("Data", shiny::br(), shiny::dataTableOutput(outputId="dataTable"), shiny::tags$style(type="text/css", '#dataTable tfoot {display:none;}')),
+ shiny::tabPanel("Data", shiny::br(), shiny::dataTableOutput(outputId="dataTable"), shiny::tags$style(type="text/css", "#dataTable tfoot { display:none; }")),
shiny::tabPanel("Estimators", shiny::br(),
shiny::dataTableOutput(outputId="estTable"),
- shiny::tags$style(type="text/css", "#estTable tfoot {display:none;}"),
+ shiny::tags$style(type="text/css", "#estTable tfoot { display:none; }"),
shiny::downloadButton(outputId="downloadEst", label="Download table as .csv")
- ),
+ )
)
)
)
git.nmode.ca / Rnaught / blobdiff
