X-Git-Url: https://git.nmode.ca/Rnaught/blobdiff_plain/a50ca5855eecf12908327252d627df3af076fc88..b87620843bcae4fc1cb6a9e9caaf52944e93b7b7:/R/ui.R diff --git a/R/ui.R b/R/ui.R index 8233ba5..d6102f9 100644 --- a/R/ui.R +++ b/R/ui.R @@ -1,54 +1,53 @@ ui <- function() { shiny::fluidPage( - shinyjs::useShinyjs(), - # Title. - shiny::titlePanel(shiny::HTML(paste0("Rnaught: an estimation suite for R", shiny::tags$sub("0")))), + shiny::titlePanel(shiny::HTML(paste0("Rnaught: An Estimation Suite for R", shiny::tags$sub("0")))), # Sidebar layout. shiny::sidebarLayout( - # Sidebar. - shiny::sidebarPanel(id="sidebar", - # Data tab sidebar. - shiny::conditionalPanel(condition="input.tabset == 'Data'", - shiny::h4("Enter data"), - # Data input method selection. - shiny::radioButtons(inputId="dataInputMethod", label="", choices=list("Manually"=1, "Upload a .csv file"=2, "Paste a .csv file"=3)), - # Option 1: Manual entry. - shiny::conditionalPanel(condition="input.dataInputMethod == '1'", - shiny::textInput(inputId="dataName", label="Dataset name"), - shiny::span(shiny::textOutput(outputId="dataNameWarn"), style="color: red"), - shiny::fluidRow( - shiny::column(8, shiny::textInput(inputId="dataCounts", label=shiny::HTML(paste0("Case counts", shiny::tags$sup(id="dataCountsHelp", "[?]"))))), - shiny::column(4, shiny::selectInput(inputId="dataUnits", label="Reporting frequency", choices=list("Daily", "Weekly"))) + # Sidebar. Hidden if the 'About' tab is selected. + shiny::conditionalPanel(condition="input.tabset != 'About'", + shiny::sidebarPanel(id="sidebar", + # Data tab sidebar. + shiny::conditionalPanel(condition="input.tabset == 'Data'", + shiny::h3("Enter data"), + # Data input method selection. + shiny::radioButtons(inputId="dataInputMethod", label="", choices=list("Manually"=1, "Upload a .csv file"=2, "Paste a .csv file"=3)), + # Option 1: Manual entry. + shiny::conditionalPanel(condition="input.dataInputMethod == '1'", + shiny::textInput(inputId="dataName", label="Dataset name"), + shiny::span(shiny::textOutput(outputId="dataNameWarn"), style="color: red;"), + shiny::fluidRow( + shiny::column(8, shiny::textInput(inputId="dataCounts", label=shiny::HTML(paste0( + "Case counts", shiny::tags$sup("[?]", title="Enter as a comma-separated list of positive integers, with at least two entries. Ex: 1,1,2,3,5,8")))) + ), + shiny::column(4, shiny::selectInput(inputId="dataUnits", label="Reporting frequency", choices=list("Daily", "Weekly"))) + ), + shiny::span(shiny::textOutput(outputId="dataCountsWarn"), style="color: red;") ), - shinyBS::bsTooltip(id="dataCountsHelp", "Enter as a comma-separated list of positive integers, with at least two entries. Ex: 1,1,2,3,5,8", placement="right", trigger="hover"), - shiny::span(shiny::textOutput(outputId="dataCountsWarn"), style="color: red") - ), - # Option 2: Upload .csv file. - shiny::conditionalPanel(condition="input.dataInputMethod == '2'", - shiny::fileInput(inputId="dataUpload", label="", accept=c("text/csv", "text/comma-separated-values,text/plain", ".csv")), - ), - # Option 3: Paste .csv file. - shiny::conditionalPanel(condition="input.dataInputMethod == '3'", - shiny::textAreaInput(inputId="dataPaste", label="", rows=8, resize="none"), - ), - # Warning text for .csv upload / paste. - shiny::conditionalPanel(condition="['2', '3'].includes(input.dataInputMethod)", - shiny::span(shiny::textOutput(outputId="dataCSVWarn"), style="color: red"), + # Option 2: Upload .csv file. + shiny::conditionalPanel(condition="input.dataInputMethod == '2'", + shiny::fileInput(inputId="dataUpload", label="", accept=c("text/csv", "text/comma-separated-values,text/plain", ".csv")), + ), + # Option 3: Paste .csv file. + shiny::conditionalPanel(condition="input.dataInputMethod == '3'", + shiny::textAreaInput(inputId="dataPaste", label="", rows=8, resize="none"), + ), + # Warning text for .csv upload / paste. + shiny::conditionalPanel(condition="['2', '3'].includes(input.dataInputMethod)", + shiny::span(shiny::textOutput(outputId="dataCSVWarn"), style="color: red;"), + ), + # Button to add data. + shiny::actionButton(inputId="addData", label="Add"), ), - # Button to add data. - shiny::actionButton(inputId="addData", label="Add"), - ), - # Estimators tab sidebar - shiny::conditionalPanel(condition="input.tabset == 'Estimators'", - shiny::h4("Estimators"), - # Collapsible menu for estimation methods. - shinyBS::bsCollapse(id="estCollapse", + # Estimators tab sidebar (collapsable entries). + shiny::conditionalPanel(condition="input.tabset == 'Estimators'", + shiny::h3("Estimators"), # WHITE & PANAGO (WP). - shinyBS::bsCollapsePanel(title="White & Panago (WP)", - "This is a description of the method.", - shiny::br(), shiny::br(), + shiny::tags$details( + shiny::tags$summary(shiny::h4("White & Panago (WP)")), + shiny::p("This is a description of the method."), + shiny::br(), shiny::radioButtons(inputId="serialWPKnown", label="Is the mean serial interval known?", inline=TRUE, choices=list("Yes"=1, "No"=2)), # Known serial interval. shiny::conditionalPanel(condition="input.serialWPKnown == '1'", @@ -56,7 +55,7 @@ ui <- function() { shiny::column(8, shiny::textInput(inputId="serialWPInput", label="Mean Serial Interval")), shiny::column(4, shiny::selectInput(inputId="serialWPUnits", label="Time units", choices=list("Days", "Weeks"))) ), - shiny::span(shiny::textOutput(outputId="serialWPWarn"), style="color: red") + shiny::span(shiny::textOutput(outputId="serialWPWarn"), style="color: red;") ), # Unknown serial interval. shiny::conditionalPanel(condition="input.serialWPKnown == '2'", @@ -67,49 +66,56 @@ ui <- function() { shiny::column(4, shiny::textInput(inputId="gridScaleInput", label="Max. scale", value="10")) ), shiny::fluidRow( - shiny::column(4, shiny::span(shiny::textOutput(outputId="gridLengthWarn"), style="color: red")), - shiny::column(4, shiny::span(shiny::textOutput(outputId="gridShapeWarn"), style="color: red")), - shiny::column(4, shiny::span(shiny::textOutput(outputId="gridScaleWarn"), style="color: red")) + shiny::column(4, shiny::span(shiny::textOutput(outputId="gridLengthWarn"), style="color: red;")), + shiny::column(4, shiny::span(shiny::textOutput(outputId="gridShapeWarn"), style="color: red;")), + shiny::column(4, shiny::span(shiny::textOutput(outputId="gridScaleWarn"), style="color: red;")) ) ), shiny::actionButton(inputId="addWP", label="Add") ), # SEQUENTIAL BAYES (seqB). - shinyBS::bsCollapsePanel(title="Sequential Bayes (seqB)", - "This is a description of the method.", - shiny::br(), shiny::br(), + shiny::tags$details( + shiny::tags$summary(shiny::h4("Sequential Bayes (seqB)")), + shiny::p("This is a description of the method."), + shiny::br(), shiny::fluidRow( shiny::column(8, shiny::textInput(inputId="serialseqBInput", label="Mean Serial Interval")), shiny::column(4, shiny::selectInput(inputId="serialseqBUnits", label="Time units", choices=list("Days", "Weeks"))) ), - shiny::span(shiny::textOutput(outputId="serialseqBWarn"), style="color: red"), - shiny::textInput(inputId="kappaInput", label=shiny::HTML(paste0("Maximum value of the uniform prior", shiny::tags$sup(id="kappaTool", "[?]"))), value="20"), - shinyBS::bsTooltip(id="kappaTool", "Some information. By default, this is set to 20.", placement="right", trigger="hover"), - shiny::span(shiny::textOutput(outputId="kappaWarn"), style="color: red"), + shiny::span(shiny::textOutput(outputId="serialseqBWarn"), style="color: red;"), + shiny::textInput(inputId="kappaInput", label=shiny::HTML(paste0("Maximum value of the uniform prior", + shiny::tags$sup("[?]", title="This describes the prior belief of R0, and should be set to a higher value if R0 is believed to be larger. (Default: 20)"))), + value="20" + ), + shiny::span(shiny::textOutput(outputId="kappaWarn"), style="color: red;"), shiny::actionButton(inputId="addseqB", label="Add") ), # INCIDENCE DECAY (ID). - shinyBS::bsCollapsePanel(title="Incidence Decay (ID)", - "This is a description of the method.", - shiny::br(), shiny::br(), + shiny::tags$details( + shiny::tags$summary(shiny::h4("Incidence Decay (ID)")), + shiny::p("This is a description of the method."), + shiny::br(), shiny::fluidRow( shiny::column(8, shiny::textInput(inputId="serialIDInput", label="Mean Serial Interval")), shiny::column(4, shiny::selectInput(inputId="serialIDUnits", label="Time units", choices=list("Days", "Weeks"))) ), - shiny::span(shiny::textOutput(outputId="serialIDWarn"), style="color: red"), + shiny::span(shiny::textOutput(outputId="serialIDWarn"), style="color: red;"), shiny::actionButton(inputId="addID", label="Add") ), # INCIDENCE DECAY & EXPONENTIAL ADJUSTEMENT (IDEA). - shinyBS::bsCollapsePanel(title="Incidence Decay and Exponential Adjustement (IDEA)", - "This is a description of the method.", - shiny::br(), shiny::br(), + shiny::tags$details( + shiny::tags$summary(shiny::h4("Incidence Decay and Exponential Adjustement (IDEA)")), + shiny::p("This is a description of the method."), + shiny::br(), shiny::fluidRow( shiny::column(8, shiny::textInput(inputId="serialIDEAInput", label="Mean Serial Interval")), shiny::column(4, shiny::selectInput(inputId="serialIDEAUnits", label="Time units", choices=list("Days", "Weeks"))) ), - shiny::span(shiny::textOutput(outputId="serialIDEAWarn"), style="color: red"), + shiny::span(shiny::textOutput(outputId="serialIDEAWarn"), style="color: red;"), shiny::actionButton(inputId="addIDEA", label="Add") - ) + ), + shiny::tags$style(type="text/css", "summary { display: list-item; cursor: pointer; }"), + shiny::tags$style(type="text/css", "summary h4 { display: inline; }") ) ) ), @@ -117,12 +123,12 @@ ui <- function() { shiny::mainPanel(id="main", shiny::tabsetPanel(id="tabset", type="tabs", shiny::tabPanel("About", shiny::br(), "Hello"), - shiny::tabPanel("Data", shiny::br(), shiny::dataTableOutput(outputId="dataTable"), shiny::tags$style(type="text/css", '#dataTable tfoot {display:none;}')), + shiny::tabPanel("Data", shiny::br(), shiny::dataTableOutput(outputId="dataTable"), shiny::tags$style(type="text/css", "#dataTable tfoot { display:none; }")), shiny::tabPanel("Estimators", shiny::br(), shiny::dataTableOutput(outputId="estTable"), - shiny::tags$style(type="text/css", "#estTable tfoot {display:none;}"), + shiny::tags$style(type="text/css", "#estTable tfoot { display:none; }"), shiny::downloadButton(outputId="downloadEst", label="Download table as .csv") - ), + ) ) ) )