From dce01ac19a0298388089ce4297a44ef2aa2c4c46 Mon Sep 17 00:00:00 2001
From: Naeem Model <me@nmode.ca>
Date: Thu, 9 May 2024 20:22:45 +0000
Subject: Revamp Shiny app

---
 .../estimators/add-estimators/parameters/id.html   |  1 +
 .../estimators/add-estimators/parameters/idea.html |  1 +
 .../add-estimators/parameters/seq_bayes.html       | 22 ++++++++++++
 .../estimators/add-estimators/parameters/wp.html   | 39 ++++++++++++++++++++++
 4 files changed, 63 insertions(+)
 create mode 100644 inst/app/templates/content/estimators/add-estimators/parameters/id.html
 create mode 100644 inst/app/templates/content/estimators/add-estimators/parameters/idea.html
 create mode 100644 inst/app/templates/content/estimators/add-estimators/parameters/seq_bayes.html
 create mode 100644 inst/app/templates/content/estimators/add-estimators/parameters/wp.html

(limited to 'inst/app/templates/content/estimators/add-estimators/parameters')

diff --git a/inst/app/templates/content/estimators/add-estimators/parameters/id.html b/inst/app/templates/content/estimators/add-estimators/parameters/id.html
new file mode 100644
index 0000000..a3159ca
--- /dev/null
+++ b/inst/app/templates/content/estimators/add-estimators/parameters/id.html
@@ -0,0 +1 @@
+{{ htmlTemplate("templates/content/estimators/add-estimators/components/mu.html", id = "id") }}
diff --git a/inst/app/templates/content/estimators/add-estimators/parameters/idea.html b/inst/app/templates/content/estimators/add-estimators/parameters/idea.html
new file mode 100644
index 0000000..379be84
--- /dev/null
+++ b/inst/app/templates/content/estimators/add-estimators/parameters/idea.html
@@ -0,0 +1 @@
+{{ htmlTemplate("templates/content/estimators/add-estimators/components/mu.html", id = "idea") }}
diff --git a/inst/app/templates/content/estimators/add-estimators/parameters/seq_bayes.html b/inst/app/templates/content/estimators/add-estimators/parameters/seq_bayes.html
new file mode 100644
index 0000000..bcc82b7
--- /dev/null
+++ b/inst/app/templates/content/estimators/add-estimators/parameters/seq_bayes.html
@@ -0,0 +1,22 @@
+<div class="row">
+  <!-- Serial interval (mu). -->
+  <div class="col-md">
+    {{ htmlTemplate("templates/content/estimators/add-estimators/components/mu.html", id = "seq_bayes") }}
+  </div>
+  <!-- Maximum value of the uniform prior (kappa). -->
+  <div class="col-md mt-2 mt-md-0">
+    <!-- Label and help tooltip. -->
+    <label class="form-label" for="kappa">
+      Maximum prior (&#954;)
+      <sup data-bs-toggle="tooltip" data-bs-placement="right" data-bs-html="true"
+           data-bs-title="The initial maximum belief of <em>R<sub>0</sub></em>. The higher this value, the higher
+                          <em>R<sub>0</sub></em> is believed to be prior to the estimation.">
+        [?]
+      </sup>
+    </label>
+    <!-- Input field. -->
+    <input name="kappa" class="form-control" type="text" placeholder="Default: 20">
+    <!-- Warning text for incorrect values. -->
+    <small id="kappa_warn" class="form-text text-primary shiny-text-output"></small>
+  </div>
+</div>
diff --git a/inst/app/templates/content/estimators/add-estimators/parameters/wp.html b/inst/app/templates/content/estimators/add-estimators/parameters/wp.html
new file mode 100644
index 0000000..b789a23
--- /dev/null
+++ b/inst/app/templates/content/estimators/add-estimators/parameters/wp.html
@@ -0,0 +1,39 @@
+<!-- Radio buttons to specify whether the serial interval is known. -->
+<label class="form-label" for="wp_mu_known">Is the serial interval known?</label>
+<div class="shiny-input-radiogroup" id="wp_mu_known">
+  <div class="form-check form-check-inline">
+    <label class="form-check-label">
+      <input type="radio" class="form-check-input me-2" name="wp_mu_known" value="Yes" checked>Yes
+    </label>
+  </div>
+  <div class="form-check form-check-inline">
+    <label class="form-check-label">
+      <input type="radio" class="form-check-input me-2" name="wp_mu_known" value="No">No
+    </label>
+  </div>
+</div>
+<!-- Show the input field for the serial interval if it is known. -->
+<div data-display-if="input.wp_mu_known == 'Yes'" class="mt-2 mt-md-0">
+    {{ htmlTemplate("templates/content/estimators/add-estimators/components/mu.html", id = "wp") }}
+</div>
+<!-- Show the input fields for the grid search parameters if the serial interval is unknown. -->
+<div data-display-if="input.wp_mu_known == 'No'" class="row">
+  <!-- Grid length. -->
+  <div class="col-md mt-2 mt-md-0">
+    <label class="form-label" for="grid_length">Grid length</label>
+    <input name="grid_length" class="form-control" type="text" placeholder="Default: 100">
+    <small id="grid_length_warn" class="form-text text-primary shiny-text-output"></small>
+  </div>
+  <!-- Maximum shape. -->
+  <div class="col-md mt-2 mt-md-0">
+    <label class="form-label" for="max_shape">Maximum shape</label>
+    <input name="max_shape" class="form-control" type="text" placeholder="Default: 10">
+    <small id="max_shape_warn" class="form-text text-primary shiny-text-output"></small>
+  </div>
+  <!-- Grid length. -->
+  <div class="col-md mt-2 mt-md-0">
+    <label class="form-label" for="max_scale">Maximum scale</label>
+    <input name="max_scale" class="form-control" type="text" placeholder="Default: 10">
+    <small id="max_scale_warn" class="form-text text-primary shiny-text-output"></small>
+  </div>
+</div>
-- 
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