From 9f3cbff9f95ea9235325a5ef7bfbb45121bbbee6 Mon Sep 17 00:00:00 2001 From: Naeem Model Date: Wed, 29 Jan 2025 01:56:29 +0000 Subject: Add GitHub action to run 'R CMD check' --- .github/workflows/R-CMD-check.yaml | 51 ++++++++++++++++++++++++++++++++++++++ README.Rmd | 4 +++ README.md | 5 ++++ 3 files changed, 60 insertions(+) create mode 100644 .github/workflows/R-CMD-check.yaml diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml new file mode 100644 index 0000000..562fe0f --- /dev/null +++ b/.github/workflows/R-CMD-check.yaml @@ -0,0 +1,51 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + +name: R-CMD-check.yaml + +permissions: read-all + +jobs: + R-CMD-check: + runs-on: ${{ matrix.config.os }} + + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + + strategy: + fail-fast: false + matrix: + config: + - {os: macos-latest, r: 'release'} + - {os: windows-latest, r: 'release'} + - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} + - {os: ubuntu-latest, r: 'release'} + - {os: ubuntu-latest, r: 'oldrel-1'} + + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes + + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-pandoc@v2 + + - uses: r-lib/actions/setup-r@v2 + with: + r-version: ${{ matrix.config.r }} + http-user-agent: ${{ matrix.config.http-user-agent }} + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::rcmdcheck + needs: check + + - uses: r-lib/actions/check-r-package@v2 + with: + upload-snapshots: true + build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' diff --git a/README.Rmd b/README.Rmd index b9b3804..30fcdf5 100644 --- a/README.Rmd +++ b/README.Rmd @@ -13,6 +13,10 @@ knitr::opts_chunk$set( # Rnaught Rnaught Logo + +[![R-CMD-check](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml) + + Rnaught is an R package and web application for estimating the [basic reproduction number (*R*0)]( https://en.wikipedia.org/wiki/Basic_reproduction_number) of infectious diseases. diff --git a/README.md b/README.md index f1dd1c8..6525ed9 100644 --- a/README.md +++ b/README.md @@ -3,6 +3,11 @@ # Rnaught Rnaught Logo + + +[![R-CMD-check](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml) + + Rnaught is an R package and web application for estimating the [basic reproduction number (*R*0)](https://en.wikipedia.org/wiki/Basic_reproduction_number) -- cgit v1.2.3