diff options
Diffstat (limited to 'R/ui.R')
| -rw-r--r-- | R/ui.R | 327 |
1 files changed, 194 insertions, 133 deletions
@@ -1,136 +1,197 @@ -ui <- function() { - shiny::fluidPage( - # Title. - shiny::titlePanel(shiny::HTML(paste0("Rnaught: An Estimation Suite for R", shiny::tags$sub("0")))), - - # Sidebar layout. - shiny::sidebarLayout( - # Sidebar. Hidden if the 'About' tab is selected. - shiny::conditionalPanel(condition="input.tabset != 'About'", - shiny::sidebarPanel(id="sidebar", - # Data tab sidebar. - shiny::conditionalPanel(condition="input.tabset == 'Data'", - shiny::h3("Enter data"), - # Data input method selection. - shiny::radioButtons(inputId="dataInputMethod", label="", choices=list("Manually"=1, "Upload a .csv file"=2, "Paste a .csv file"=3)), - # Option 1: Manual entry. - shiny::conditionalPanel(condition="input.dataInputMethod == '1'", - shiny::textInput(inputId="dataName", label="Dataset name"), - shiny::span(shiny::textOutput(outputId="dataNameWarn"), style="color: red;"), - shiny::fluidRow( - shiny::column(8, shiny::textInput(inputId="dataCounts", label=shiny::HTML(paste0( - "Case counts", shiny::tags$sup("[?]", title="Enter as a comma-separated list of positive integers, with at least two entries. Ex: 1,1,2,3,5,8")))) - ), - shiny::column(4, shiny::selectInput(inputId="dataUnits", label="Reporting frequency", choices=list("Daily", "Weekly"))) - ), - shiny::span(shiny::textOutput(outputId="dataCountsWarn"), style="color: red;") - ), - # Option 2: Upload .csv file. - shiny::conditionalPanel(condition="input.dataInputMethod == '2'", - shiny::fileInput(inputId="dataUpload", label="", accept=c("text/csv", "text/comma-separated-values,text/plain", ".csv")), - ), - # Option 3: Paste .csv file. - shiny::conditionalPanel(condition="input.dataInputMethod == '3'", - shiny::textAreaInput(inputId="dataPaste", label="", rows=8, resize="none"), - ), - # Warning text for .csv upload / paste. - shiny::conditionalPanel(condition="['2', '3'].includes(input.dataInputMethod)", - shiny::span(shiny::textOutput(outputId="dataCSVWarn"), style="color: red;"), - ), - # Button to add data. - shiny::actionButton(inputId="addData", label="Add"), - ), - # Estimators tab sidebar (collapsable entries). - shiny::conditionalPanel(condition="input.tabset == 'Estimators'", - shiny::h3("Estimators"), - # WHITE & PANAGO (WP). - shiny::tags$details( - shiny::tags$summary(shiny::h4("White & Panago (WP)")), - shiny::p("This is a description of the method."), - shiny::br(), - shiny::radioButtons(inputId="serialWPKnown", label="Is the mean serial interval known?", inline=TRUE, choices=list("Yes"=1, "No"=2)), - # Known serial interval. - shiny::conditionalPanel(condition="input.serialWPKnown == '1'", - shiny::fluidRow( - shiny::column(8, shiny::textInput(inputId="serialWPInput", label="Mean Serial Interval")), - shiny::column(4, shiny::selectInput(inputId="serialWPUnits", label="Time units", choices=list("Days", "Weeks"))) - ), - shiny::span(shiny::textOutput(outputId="serialWPWarn"), style="color: red;") - ), - # Unknown serial interval. - shiny::conditionalPanel(condition="input.serialWPKnown == '2'", - shiny::h5("Grid Search Parameters"), - shiny::fluidRow( - shiny::column(4, shiny::textInput(inputId="gridLengthInput", label="Grid length", value="100")), - shiny::column(4, shiny::textInput(inputId="gridShapeInput", label="Max. shape", value="10")), - shiny::column(4, shiny::textInput(inputId="gridScaleInput", label="Max. scale", value="10")) - ), - shiny::fluidRow( - shiny::column(4, shiny::span(shiny::textOutput(outputId="gridLengthWarn"), style="color: red;")), - shiny::column(4, shiny::span(shiny::textOutput(outputId="gridShapeWarn"), style="color: red;")), - shiny::column(4, shiny::span(shiny::textOutput(outputId="gridScaleWarn"), style="color: red;")) - ) - ), - shiny::actionButton(inputId="addWP", label="Add") - ), - # SEQUENTIAL BAYES (seqB). - shiny::tags$details( - shiny::tags$summary(shiny::h4("Sequential Bayes (seqB)")), - shiny::p("This is a description of the method."), - shiny::br(), - shiny::fluidRow( - shiny::column(8, shiny::textInput(inputId="serialseqBInput", label="Mean Serial Interval")), - shiny::column(4, shiny::selectInput(inputId="serialseqBUnits", label="Time units", choices=list("Days", "Weeks"))) - ), - shiny::span(shiny::textOutput(outputId="serialseqBWarn"), style="color: red;"), - shiny::textInput(inputId="kappaInput", label=shiny::HTML(paste0("Maximum value of the uniform prior", - shiny::tags$sup("[?]", title="This describes the prior belief of R0, and should be set to a higher value if R0 is believed to be larger. (Default: 20)"))), - value="20" - ), - shiny::span(shiny::textOutput(outputId="kappaWarn"), style="color: red;"), - shiny::actionButton(inputId="addseqB", label="Add") - ), - # INCIDENCE DECAY (ID). - shiny::tags$details( - shiny::tags$summary(shiny::h4("Incidence Decay (ID)")), - shiny::p("This is a description of the method."), - shiny::br(), - shiny::fluidRow( - shiny::column(8, shiny::textInput(inputId="serialIDInput", label="Mean Serial Interval")), - shiny::column(4, shiny::selectInput(inputId="serialIDUnits", label="Time units", choices=list("Days", "Weeks"))) - ), - shiny::span(shiny::textOutput(outputId="serialIDWarn"), style="color: red;"), - shiny::actionButton(inputId="addID", label="Add") - ), - # INCIDENCE DECAY & EXPONENTIAL ADJUSTEMENT (IDEA). - shiny::tags$details( - shiny::tags$summary(shiny::h4("Incidence Decay and Exponential Adjustement (IDEA)")), - shiny::p("This is a description of the method."), - shiny::br(), - shiny::fluidRow( - shiny::column(8, shiny::textInput(inputId="serialIDEAInput", label="Mean Serial Interval")), - shiny::column(4, shiny::selectInput(inputId="serialIDEAUnits", label="Time units", choices=list("Days", "Weeks"))) - ), - shiny::span(shiny::textOutput(outputId="serialIDEAWarn"), style="color: red;"), - shiny::actionButton(inputId="addIDEA", label="Add") - ), - shiny::tags$style(type="text/css", "summary { display: list-item; cursor: pointer; }"), - shiny::tags$style(type="text/css", "summary h4 { display: inline; }") - ) - ) +ui <- shiny::fluidPage( + # Title. + shiny::titlePanel(shiny::HTML( + paste0("Rnaught: An Estimation Suite for R", shiny::tags$sub("0")))), + # Sidebar layout. + shiny::sidebarLayout( + # Sidebar. Hidden if the 'About' tab is selected. + shiny::conditionalPanel(condition = "input.tabset != 'About'", + shiny::sidebarPanel(id = "sidebar", + # Data tab sidebar. + shiny::conditionalPanel(condition = "input.tabset == 'Data'", + shiny::h3("Enter data"), + # Data input method selection. + shiny::radioButtons(inputId = "dataInputMethod", label = "", + choices=list("Manually" = 1, "Upload a .csv file" = 2, + "Paste a .csv file" = 3)), + # Option 1: Manual entry. + shiny::conditionalPanel(condition = "input.dataInputMethod == '1'", + shiny::textInput(inputId = "dataName", label = "Dataset name"), + shiny::span(shiny::textOutput(outputId = "dataNameWarn"), + style = "color: red;"), + shiny::fluidRow( + shiny::column(8, + shiny::textInput(inputId = "dataCounts", label = shiny::HTML( + paste0("Case counts", shiny::tags$sup("[?]", + title = "Enter as a comma-separated list of positive + integers, with at least two entries. + Example: 1,1,2,3,5,8"))))), + shiny::column(4, + shiny::selectInput(inputId = "dataUnits", + label = "Reporting frequency", + choices = list("Daily", "Weekly"))) ), - # Main panel. - shiny::mainPanel(id="main", - shiny::tabsetPanel(id="tabset", type="tabs", - shiny::tabPanel("About", shiny::br(), "Hello"), - shiny::tabPanel("Data", shiny::br(), shiny::dataTableOutput(outputId="dataTable"), shiny::tags$style(type="text/css", "#dataTable tfoot { display:none; }")), - shiny::tabPanel("Estimators", shiny::br(), - shiny::dataTableOutput(outputId="estTable"), - shiny::tags$style(type="text/css", "#estTable tfoot { display:none; }"), - shiny::downloadButton(outputId="downloadEst", label="Download table as .csv") - ) - ) - ) + shiny::span(shiny::textOutput(outputId = "dataCountsWarn"), + style = "color: red;") + ), + # Option 2: Upload .csv file. + shiny::conditionalPanel(condition = "input.dataInputMethod == '2'", + shiny::fileInput(inputId = "dataUpload", label = "", + accept = c("text/csv", "text/comma-separated-values,text/plain", + ".csv")), + ), + # Option 3: Paste .csv file. + shiny::conditionalPanel(condition = "input.dataInputMethod == '3'", + shiny::textAreaInput(inputId = "dataPaste", label = "", + rows = 8, resize = "none"), + ), + # Warning text for .csv upload / paste. + shiny::conditionalPanel( + condition = "['2', '3'].includes(input.dataInputMethod)", + shiny::span(shiny::textOutput(outputId = "dataCSVWarn"), + style = "color: red;"), + ), + # Button to add data. + shiny::actionButton(inputId = "addData", label = "Add"), + ), + # Estimators tab sidebar (collapsable entries). + shiny::conditionalPanel(condition = "input.tabset == 'Estimators'", + shiny::h3("Estimators"), + # WHITE & PANAGO (WP). + shiny::tags$details( + shiny::tags$summary(shiny::h4("White & Panago (WP)")), + shiny::p("This is a description of the method."), + shiny::br(), + shiny::radioButtons(inputId = "serialWPKnown", + label = "Is the mean serial interval known?", + inline = TRUE, + choices = list("Yes" = 1, "No" = 2)), + # Known serial interval. + shiny::conditionalPanel(condition = "input.serialWPKnown == '1'", + shiny::fluidRow( + shiny::column(8, + shiny::textInput(inputId = "serialWPInput", + label = "Mean Serial Interval")), + shiny::column(4, + shiny::selectInput(inputId = "serialWPUnits", + label = "Time units", + choices = list("Days", "Weeks"))) + ), + shiny::span(shiny::textOutput(outputId = "serialWPWarn"), + style = "color: red;") + ), + # Unknown serial interval. + shiny::conditionalPanel(condition = "input.serialWPKnown == '2'", + shiny::h5("Grid Search Parameters"), + shiny::fluidRow( + shiny::column(4, + shiny::textInput(inputId = "gridLengthInput", + label = "Grid length", value = "100")), + shiny::column(4, + shiny::textInput(inputId = "gridShapeInput", + label = "Max. shape", value = "10")), + shiny::column(4, + shiny::textInput(inputId = "gridScaleInput", + label = "Max. scale", value = "10")) + ), + shiny::fluidRow( + shiny::column(4, + shiny::span(shiny::textOutput(outputId = "gridLengthWarn"), + style = "color: red;")), + shiny::column(4, + shiny::span(shiny::textOutput(outputId = "gridShapeWarn"), + style = "color: red;")), + shiny::column(4, + shiny::span(shiny::textOutput(outputId = "gridScaleWarn"), + style = "color: red;")) + ) + ), + shiny::actionButton(inputId = "addWP", label = "Add") + ), + # SEQUENTIAL BAYES (seqB). + shiny::tags$details( + shiny::tags$summary(shiny::h4("Sequential Bayes (seqB)")), + shiny::p("This is a description of the method."), + shiny::br(), + shiny::fluidRow( + shiny::column(8, + shiny::textInput(inputId = "serialseqBInput", + label = "Mean Serial Interval")), + shiny::column(4, + shiny::selectInput(inputId = "serialseqBUnits", + label = "Time units", + choices = list("Days", "Weeks"))) + ), + shiny::span(shiny::textOutput(outputId = "serialseqBWarn"), + style = "color: red;"), + shiny::textInput(inputId = "kappaInput", label = shiny::HTML( + paste0("Maximum value", shiny::tags$sup("[?]", + title = "This describes the prior belief of R0, and should + be set to a higher value if R0 is believed to be + larger. (Default: 20)"))), value = "20"), + shiny::span(shiny::textOutput(outputId = "kappaWarn"), + style = "color: red;"), + shiny::actionButton(inputId = "addseqB", label = "Add") + ), + # INCIDENCE DECAY (ID). + shiny::tags$details( + shiny::tags$summary(shiny::h4("Incidence Decay (ID)")), + shiny::p("This is a description of the method."), + shiny::br(), + shiny::fluidRow( + shiny::column(8, + shiny::textInput(inputId = "serialIDInput", + label = "Mean Serial Interval")), + shiny::column(4, + shiny::selectInput(inputId = "serialIDUnits", + label = "Time units", + choices = list("Days", "Weeks"))) + ), + shiny::span(shiny::textOutput(outputId = "serialIDWarn"), + style = "color: red;"), + shiny::actionButton(inputId = "addID", label = "Add") + ), + # INCIDENCE DECAY & EXPONENTIAL ADJUSTEMENT (IDEA). + shiny::tags$details( + shiny::tags$summary( + shiny::h4("Incidence Decay and Exponential Adjustement (IDEA)")), + shiny::p("This is a description of the method."), + shiny::br(), + shiny::fluidRow( + shiny::column(8, + shiny::textInput(inputId = "serialIDEAInput", + label = "Mean Serial Interval")), + shiny::column(4, + shiny::selectInput(inputId = "serialIDEAUnits", + label = "Time units", + choices = list("Days", "Weeks"))) + ), + shiny::span(shiny::textOutput(outputId = "serialIDEAWarn"), + style = "color: red;"), + shiny::actionButton(inputId = "addIDEA", label = "Add") + ), + shiny::tags$style(type = "text/css", + "summary { display: list-item; cursor: pointer; }"), + shiny::tags$style(type = "text/css", + "summary h4 { display: inline; }") ) + ) + ), + # Main panel. + shiny::mainPanel(id = "main", + shiny::tabsetPanel(id = "tabset", type = "tabs", + shiny::tabPanel("About", shiny::br(), "Hello"), + shiny::tabPanel("Data", shiny::br(), + shiny::dataTableOutput(outputId = "dataTable"), + shiny::tags$style(type = "text/css", + "#dataTable tfoot { display:none; }")), + shiny::tabPanel("Estimators", shiny::br(), + shiny::dataTableOutput(outputId = "estTable"), + shiny::tags$style(type = "text/css", + "#estTable tfoot { display:none; }"), + shiny::downloadButton(outputId = "downloadEst", + label = "Download table as .csv")) + ) ) -} + ) +) |