nmode's Git Repositories - Rnaught/commit

]> nmode's Git Repositories - Rnaught/commit

author	Naeem Model <me@nmode.ca>
	Sun, 9 Jun 2024 16:01:51 +0000 (16:01 +0000)
committer	Naeem Model <me@nmode.ca>
	Sun, 9 Jun 2024 16:01:51 +0000 (16:01 +0000)
commit	9fd931aeeba4ab7bdede1a625f64e7024c2b55aa
tree	b59967df497f898e9b8f7e1cd0e345ed0ff71e36	tree \| snapshot
parent	887c57c423ca8318d482a9f85514b3d6f281a696	commit \| diff

Update Shiny app

- Remove template/logic for single data entry
- Change 'Add estimators' to 'About estimators'; adding estimators and viewing estimates are now done in the same tab
- Swap rows and columns in estimates table (estimators as row names, datasets as column names)
- Add a separate column for the serial interval to the estimates table
- Add plots for daily and weekly data using the Plotly library
- Remove italics from the subscript in all occurences of 'R_0'
- Fix code/text formatting

50 files changed:

DESCRIPTION		diff \| blob \| blame \| history
R/app.R		diff \| blob \| blame \| history
inst/app/scripts/data.R		diff \| blob \| blame \| history
inst/app/scripts/estimators.R		diff \| blob \| blame \| history
inst/app/templates/content.html		diff \| blob \| blame \| history
inst/app/templates/content/about.html		diff \| blob \| blame \| history
inst/app/templates/content/data.html		diff \| blob \| blame \| history
inst/app/templates/content/data/enter-data.html		diff \| blob \| blame \| history
inst/app/templates/content/data/enter-data/bulk-entry.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/data/enter-data/entry.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/data/enter-data/load-samples.html		diff \| blob \| blame \| history
inst/app/templates/content/data/enter-data/manual-entry.html	[new file with mode: 0644]	blob
inst/app/templates/content/data/enter-data/required-format.html	[new file with mode: 0644]	blob
inst/app/templates/content/data/enter-data/single-entry.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/data/enter-data/upload-data.html	[new file with mode: 0644]	blob
inst/app/templates/content/data/view-data.html		diff \| blob \| blame \| history
inst/app/templates/content/data/view-data/data-plots.html	[new file with mode: 0644]	blob
inst/app/templates/content/data/view-data/data-table.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimation.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimation/about-estimators.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimation/about-estimators/id.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimation/about-estimators/idea.html	[moved from inst/app/templates/content/estimators/add-estimators/descriptions/idea.html with 100% similarity]	blob \| blame \| history
inst/app/templates/content/estimation/about-estimators/panel.html	[moved from inst/app/templates/content/estimators/add-estimators/components/panel.html with 51% similarity]	diff \| blob \| blame \| history
inst/app/templates/content/estimation/about-estimators/seq_bayes.html	[moved from inst/app/templates/content/estimators/add-estimators/descriptions/seq_bayes.html with 100% similarity]	blob \| blame \| history
inst/app/templates/content/estimation/about-estimators/wp.html	[moved from inst/app/templates/content/estimators/add-estimators/descriptions/wp.html with 100% similarity]	blob \| blame \| history
inst/app/templates/content/estimation/estimates.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimation/estimates/add-estimators.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimation/estimates/add-estimators/id.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimation/estimates/add-estimators/idea.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimation/estimates/add-estimators/mu.html	[moved from inst/app/templates/content/estimators/add-estimators/components/mu.html with 86% similarity]	diff \| blob \| blame \| history
inst/app/templates/content/estimation/estimates/add-estimators/parameters.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimation/estimates/add-estimators/seq_bayes.html	[moved from inst/app/templates/content/estimators/add-estimators/parameters/seq_bayes.html with 70% similarity]	diff \| blob \| blame \| history
inst/app/templates/content/estimation/estimates/add-estimators/wp.html	[moved from inst/app/templates/content/estimators/add-estimators/parameters/wp.html with 94% similarity]	diff \| blob \| blame \| history
inst/app/templates/content/estimation/estimates/estimates-table.html	[new file with mode: 0644]	blob
inst/app/templates/content/estimators.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/estimators/add-estimators.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/estimators/add-estimators/descriptions/id.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/estimators/add-estimators/descriptions/mu.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/estimators/add-estimators/parameters/id.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/estimators/add-estimators/parameters/idea.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/estimators/add-estimators/parameters/mu.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/estimators/view-estimates.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/help.html		diff \| blob \| blame \| history
inst/app/templates/content/help/example-help-1.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/help/example-help-2.html	[deleted file]	blob \| blame \| history
inst/app/templates/content/help/serial-interval.html		diff \| blob \| blame \| history
inst/app/templates/navbar.html		diff \| blob \| blame \| history
inst/app/templates/tabs.html		diff \| blob \| blame \| history
inst/app/www/script.js		diff \| blob \| blame \| history
inst/app/www/styles.css		diff \| blob \| blame \| history

[GitHub/MI2YorkU] An R package and web application for estimating the basic reproduction number (R0) of infectious diseases.

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