X-Git-Url: https://git.nmode.ca/Rnaught/blobdiff_plain/ad290ab58f20c68692fd3cf75c87136e0a9ffdb4..HEAD:/README.Rmd diff --git a/README.Rmd b/README.Rmd index f56e18c..30fcdf5 100644 --- a/README.Rmd +++ b/README.Rmd @@ -13,8 +13,65 @@ knitr::opts_chunk$set( # Rnaught Rnaught Logo + +[![R-CMD-check](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml) + + Rnaught is an R package and web application for estimating the -[basic reproduction number (_R_~0~)]( +[basic reproduction number (*R*0)]( https://en.wikipedia.org/wiki/Basic_reproduction_number) of infectious diseases. -In progress... +An instance of the web application is available at +. + + +## Installation + +You can install the development version of Rnaught using the [devtools]( +https://devtools.r-lib.org) package. Run the following commands in an R session: + +``` r +install.packages("devtools") # If not already installed. +devtools::install_github("MI2YorkU/Rnaught", build_vignettes = TRUE) +``` + + +## Documentation + +The package documentation is available online at +. + +For a quick introduction, see the [Get started]( +https://MI2YorkU.github.io/Rnaught/articles/Rnaught.html) page. This can also be +accessed from an R session with `vignette("Rnaught", package = "Rnaught")`. + +To view the documentation locally, run `?Rnaught::`. A list of all +functions is shown in the package index by executing +`help(package = "Rnaught")`. + + +## Contributing + +The source code for this package is available on +[GitHub](https://github.com/MI2YorkU/Rnaught). + +To report a bug, request a new feature, give feedback, or ask questions, open a +new [issue](https://github.com/MI2YorkU/Rnaught/issues). + +Submit new estimators, features, bug fixes, or patches by creating a +[pull request](https://github.com/MI2YorkU/Rnaught/pulls). + + +## License + +This program is free software: you can redistribute it and/or modify it under +the terms of the GNU Affero General Public License as published by the Free +Software Foundation, either version 3 of the License, or (at your option) any +later version. + +This program is distributed in the hope that it will be useful, but WITHOUT ANY +WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A +PARTICULAR PURPOSE. See the GNU Affero General Public License for more details. + +You should have received a copy of the GNU Affero General Public License along +with this program. If not, see .