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[Rnaught] / README.md

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 # Rnaught <a href="https://MI2YorkU.github.io/Rnaught"><img src="man/figures/logo.svg" align="right" height="139" alt="Rnaught Logo"></a>
 
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+
+[![R-CMD-check](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/MI2YorkU/Rnaught/actions/workflows/R-CMD-check.yaml)
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+
 Rnaught is an R package and web application for estimating the [basic
 reproduction number
 (*R*<sub>0</sub>)](https://en.wikipedia.org/wiki/Basic_reproduction_number)
 of infectious diseases.
 
-In progress…
+An instance of the web application is available at
+<https://immune.math.yorku.ca/Rnaught>.
+
+## Installation
+
+You can install the development version of Rnaught using the
+[devtools](https://devtools.r-lib.org) package. Run the following
+commands in an R session:
+
+``` r
+install.packages("devtools") # If not already installed.
+devtools::install_github("MI2YorkU/Rnaught", build_vignettes = TRUE)
+```
+
+## Documentation
+
+The package documentation is available online at
+<https://MI2YorkU.github.io/Rnaught>.
+
+For a quick introduction, see the [Get
+started](https://MI2YorkU.github.io/Rnaught/articles/Rnaught.html) page.
+This can also be accessed from an R session with
+`vignette("Rnaught", package = "Rnaught")`.
+
+To view the documentation locally, run `?Rnaught::<function>`. A list of
+all functions is shown in the package index by executing
+`help(package = "Rnaught")`.
+
+## Contributing
+
+The source code for this package is available on
+[GitHub](https://github.com/MI2YorkU/Rnaught).
+
+To report a bug, request a new feature, give feedback, or ask questions,
+open a new [issue](https://github.com/MI2YorkU/Rnaught/issues).
+
+Submit new estimators, features, bug fixes, or patches by creating a
+[pull request](https://github.com/MI2YorkU/Rnaught/pulls).
+
+## License
+
+This program is free software: you can redistribute it and/or modify it
+under the terms of the GNU Affero General Public License as published by
+the Free Software Foundation, either version 3 of the License, or (at
+your option) any later version.
+
+This program is distributed in the hope that it will be useful, but
+WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero
+General Public License for more details.
+
+You should have received a copy of the GNU Affero General Public License
+along with this program. If not, see <https://www.gnu.org/licenses>.