+++ /dev/null
-ui <- function() { shiny::fluidPage(
- # Title.
- shiny::titlePanel(shiny::HTML(
- paste0("Rnaught: An Estimation Suite for R", shiny::tags$sub("0")))),
- # Sidebar layout.
- shiny::sidebarLayout(
- # Sidebar. Hidden if the 'About' tab is selected.
- shiny::conditionalPanel(condition = "input.tabset != 'About'",
- shiny::sidebarPanel(id = "sidebar",
- # Data tab sidebar.
- shiny::conditionalPanel(condition = "input.tabset == 'Data'",
- shiny::h3("Enter data"),
- # Data input method selection.
- shiny::radioButtons(inputId = "dataInputMethod", label = "",
- choices=list("Manually" = 1, "Upload a .csv file" = 2,
- "Paste a .csv file" = 3)),
- # Option 1: Manual entry.
- shiny::conditionalPanel(condition = "input.dataInputMethod == '1'",
- shiny::textInput(inputId = "dataName", label = "Dataset name"),
- shiny::span(shiny::textOutput(outputId = "dataNameWarn"),
- style = "color: red;"),
- shiny::fluidRow(
- shiny::column(8,
- shiny::textInput(inputId = "dataCounts", label = shiny::HTML(
- paste0("Case counts", shiny::tags$sup("[?]",
- title = "Enter as a comma-separated list of positive
- integers, with at least two entries.
- Example: 1,1,2,3,5,8"))))),
- shiny::column(4,
- shiny::selectInput(inputId = "dataUnits",
- label = "Reporting frequency",
- choices = list("Daily", "Weekly")))
- ),
- shiny::span(shiny::textOutput(outputId = "dataCountsWarn"),
- style = "color: red;")
- ),
- # Option 2: Upload .csv file.
- shiny::conditionalPanel(condition = "input.dataInputMethod == '2'",
- shiny::fileInput(inputId = "dataUpload", label = "",
- accept = c("text/csv", "text/comma-separated-values,text/plain",
- ".csv")),
- ),
- # Option 3: Paste .csv file.
- shiny::conditionalPanel(condition = "input.dataInputMethod == '3'",
- shiny::textAreaInput(inputId = "dataPaste", label = "",
- rows = 8, resize = "none"),
- ),
- # Warning text for .csv upload / paste.
- shiny::conditionalPanel(
- condition = "['2', '3'].includes(input.dataInputMethod)",
- shiny::span(shiny::textOutput(outputId = "dataCSVWarn"),
- style = "color: red;"),
- ),
- # Button to add data.
- shiny::actionButton(inputId = "addData", label = "Add"),
- ),
- # Estimators tab sidebar (collapsable entries).
- shiny::conditionalPanel(condition = "input.tabset == 'Estimators'",
- shiny::h3("Estimators"),
- # WHITE & PANAGO (WP).
- shiny::tags$details(
- shiny::tags$summary(shiny::h4("White & Panago (WP)")),
- shiny::p("This is a description of the method."),
- shiny::br(),
- shiny::radioButtons(inputId = "serialWPKnown",
- label = "Is the mean serial interval known?",
- inline = TRUE,
- choices = list("Yes" = 1, "No" = 2)),
- # Known serial interval.
- shiny::conditionalPanel(condition = "input.serialWPKnown == '1'",
- shiny::fluidRow(
- shiny::column(8,
- shiny::textInput(inputId = "serialWPInput",
- label = "Mean Serial Interval")),
- shiny::column(4,
- shiny::selectInput(inputId = "serialWPUnits",
- label = "Time units",
- choices = list("Days", "Weeks")))
- ),
- shiny::span(shiny::textOutput(outputId = "serialWPWarn"),
- style = "color: red;")
- ),
- # Unknown serial interval.
- shiny::conditionalPanel(condition = "input.serialWPKnown == '2'",
- shiny::h5("Grid Search Parameters"),
- shiny::fluidRow(
- shiny::column(4,
- shiny::textInput(inputId = "gridLengthInput",
- label = "Grid length", value = "100")),
- shiny::column(4,
- shiny::textInput(inputId = "gridShapeInput",
- label = "Max. shape", value = "10")),
- shiny::column(4,
- shiny::textInput(inputId = "gridScaleInput",
- label = "Max. scale", value = "10"))
- ),
- shiny::fluidRow(
- shiny::column(4,
- shiny::span(shiny::textOutput(outputId = "gridLengthWarn"),
- style = "color: red;")),
- shiny::column(4,
- shiny::span(shiny::textOutput(outputId = "gridShapeWarn"),
- style = "color: red;")),
- shiny::column(4,
- shiny::span(shiny::textOutput(outputId = "gridScaleWarn"),
- style = "color: red;"))
- )
- ),
- shiny::actionButton(inputId = "addWP", label = "Add")
- ),
- # SEQUENTIAL BAYES (seqB).
- shiny::tags$details(
- shiny::tags$summary(shiny::h4("Sequential Bayes (seqB)")),
- shiny::p("This is a description of the method."),
- shiny::br(),
- shiny::fluidRow(
- shiny::column(8,
- shiny::textInput(inputId = "serialseqBInput",
- label = "Mean Serial Interval")),
- shiny::column(4,
- shiny::selectInput(inputId = "serialseqBUnits",
- label = "Time units",
- choices = list("Days", "Weeks")))
- ),
- shiny::span(shiny::textOutput(outputId = "serialseqBWarn"),
- style = "color: red;"),
- shiny::textInput(inputId = "kappaInput", label = shiny::HTML(
- paste0("Maximum value", shiny::tags$sup("[?]",
- title = "This describes the prior belief of R0, and should
- be set to a higher value if R0 is believed to be
- larger. (Default: 20)"))), value = "20"),
- shiny::span(shiny::textOutput(outputId = "kappaWarn"),
- style = "color: red;"),
- shiny::actionButton(inputId = "addseqB", label = "Add")
- ),
- # INCIDENCE DECAY (ID).
- shiny::tags$details(
- shiny::tags$summary(shiny::h4("Incidence Decay (ID)")),
- shiny::p("This is a description of the method."),
- shiny::br(),
- shiny::fluidRow(
- shiny::column(8,
- shiny::textInput(inputId = "serialIDInput",
- label = "Mean Serial Interval")),
- shiny::column(4,
- shiny::selectInput(inputId = "serialIDUnits",
- label = "Time units",
- choices = list("Days", "Weeks")))
- ),
- shiny::span(shiny::textOutput(outputId = "serialIDWarn"),
- style = "color: red;"),
- shiny::actionButton(inputId = "addID", label = "Add")
- ),
- # INCIDENCE DECAY & EXPONENTIAL ADJUSTEMENT (IDEA).
- shiny::tags$details(
- shiny::tags$summary(
- shiny::h4("Incidence Decay and Exponential Adjustement (IDEA)")),
- shiny::p("This is a description of the method."),
- shiny::br(),
- shiny::fluidRow(
- shiny::column(8,
- shiny::textInput(inputId = "serialIDEAInput",
- label = "Mean Serial Interval")),
- shiny::column(4,
- shiny::selectInput(inputId = "serialIDEAUnits",
- label = "Time units",
- choices = list("Days", "Weeks")))
- ),
- shiny::span(shiny::textOutput(outputId = "serialIDEAWarn"),
- style = "color: red;"),
- shiny::actionButton(inputId = "addIDEA", label = "Add")
- ),
- shiny::tags$style(type = "text/css",
- "summary { display: list-item; cursor: pointer; }"),
- shiny::tags$style(type = "text/css",
- "summary h4 { display: inline; }")
- )
- )
- ),
- # Main panel.
- shiny::mainPanel(id = "main",
- shiny::tabsetPanel(id = "tabset", type = "tabs",
- shiny::tabPanel("About", shiny::br(), "Hello"),
- shiny::tabPanel("Data", shiny::br(),
- shiny::dataTableOutput(outputId = "dataTable"),
- shiny::tags$style(type = "text/css",
- "#dataTable tfoot { display:none; }")),
- shiny::tabPanel("Estimators", shiny::br(),
- shiny::dataTableOutput(outputId = "estTable"),
- shiny::tags$style(type = "text/css",
- "#estTable tfoot { display:none; }"),
- shiny::downloadButton(outputId = "downloadEst",
- label = "Download table as .csv"))
- )
- )
- )
-)}
git.nmode.ca / Rnaught / blobdiff
