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[Rnaught] / articles / wp_serial.html
diff --git a/articles/wp_serial.html b/articles/wp_serial.html

index 8686332a28491bdaf59eac18ca35b0c7906ff18f..9f41be7ab518248393c72a8b573b01bc0beebbe4 100644 (file)
--- a/articles/wp_serial.html
+++ b/articles/wp_serial.html
@@ -6,10 +6,15 @@
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  <title>White and Pagano: Utilizing the Serial Distribution • Rnaught</title>
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  <title>White and Pagano: Utilizing the Serial Distribution • Rnaught</title>
+<!-- favicons --><link rel="icon" type="image/png" sizes="96x96" href="../favicon-96x96.png">
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@@ -29,6 +34,7 @@
  
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+<li class="nav-item"><a class="nav-link" href="../articles/Rnaught.html">Get started</a></li>
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@@ -70,16 +76,16 @@ symptomatic, to when another individual who is infected by the infector
  becomes symptomatic. The serial interval refers to a range of likely
  values from this distribution, although it is typically reported as the
  mean.</p>
  becomes symptomatic. The serial interval refers to a range of likely
  values from this distribution, although it is typically reported as the
  mean.</p>
-<p>In the White and Pagano method, the serial distribution is assumed to
-be a discretized, finite version of a gamma distribution. Setting the
-parameter <code>serial</code> to <code>TRUE</code> causes this
-discretized distribution to be returned in addition to the estimate of
-R0. Furthermore, the method can be used whether or not the serial
-interval (specified as the parameter <code>mu</code>) is known. When
-<code>mu</code> is specified, it is taken to be the mean of a continuous
-gamma distribution (i.e., before the discretization). As such, the mean
-computed from the returned serial distribution may differ slightly from
-<code>mu</code>:</p>
+<p>In the White and Pagano method, <code><a href="../reference/wp.html">wp()</a></code>, the serial
+distribution is assumed to be a discretized, finite version of a gamma
+distribution. Setting the parameter <code>serial</code> to
+<code>TRUE</code> causes this discretized distribution to be returned in
+addition to the estimate of R0. Furthermore, the method can be used
+whether or not the serial interval (specified as the parameter
+<code>mu</code>) is known. When <code>mu</code> is specified, it is
+taken to be the mean of a continuous gamma distribution (i.e., before
+the discretization). As such, the mean computed from the returned serial
+distribution may differ slightly from <code>mu</code>:</p>
  <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
  <code class="sourceCode R"><span><span class="co"># Case counts.</span></span>
  <span><span class="va">cases</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">4</span>, <span class="fl">10</span>, <span class="fl">5</span>, <span class="fl">3</span>, <span class="fl">4</span>, <span class="fl">19</span>, <span class="fl">3</span>, <span class="fl">3</span>, <span class="fl">14</span>, <span class="fl">4</span><span class="op">)</span></span>
  <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
  <code class="sourceCode R"><span><span class="co"># Case counts.</span></span>
  <span><span class="va">cases</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">4</span>, <span class="fl">10</span>, <span class="fl">5</span>, <span class="fl">3</span>, <span class="fl">4</span>, <span class="fl">19</span>, <span class="fl">3</span>, <span class="fl">3</span>, <span class="fl">14</span>, <span class="fl">4</span><span class="op">)</span></span>
@@ -124,11 +130,11 @@ estimates of the serial interval:</p>
  
  
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-  <p>Developed by Sawitree Boonpatcharanon, Jane Heffernan, Hanna Jankowski, Naeem Model.</p>
+  <p>Developed by Naeem Model, Sawitree Boonpatcharanon, Jane Heffernan, Hanna Jankowski, Tatiana Krikella.</p>
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-  <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.3.</p>
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